AMCG00014701


Basic Information

Item Value
gene id AMCG00014701
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27483088 ~ 27491264 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014701
CTGAGCTACAGTAAGGAAtcgGCATGTGAATCGTTGCTGCCTGGCTGGAtagagatgaaaaacaaaaacgagtGCGTCAGTGCATTTGGTTTCATACTTGTACCTTCTGCTGACGTATAGACGATTATATGGGCTGTACTAAACAAGACACTACGCCATGGTCCGGCCGTGGTGCCCGCGCACCTGGCTGTGCTCCCGATCGTCTGTCTACACCCTGCTGCTGGGCACTGGTTTCGTTACCCTGGGCACCAGTCGCATTCTCCTACTGAAATTTTCTGCCAACGCAGAAAATAAGTATGACTACCTGCCTGCCTCTGTCAACCTGTGCGCAGAGGCCATCAAACTGGTGTTGTGTCTGGCGATGTCTGTGCGTGTCATGATCCACGAGGGACGTTCGTACAGAGAGTGGGGCTGTTCTTCCTGCAGGGACTTCCTGAATTACATGAAGTGGTCTGTTCCAGCCTTACTCTACTTCCTGGACAACCTCATCATCTTCTATGTGTTGTCCTATCTCCAGCCTGCTATGGCTGTATTATTTTCCAACTTTGTCATTCTGACTACAGCTATCTTATTCAGAATCGTCCTAAAGAGGCGCCTCTCTTGGGTGCAGTGGGCATCTTTGGTGATCCTCTTCCTATCCATTGTTGGCCTGACGAGGGGGACTGGGGGAAGCCAGCATGCCATTGCCGTTCACGGGCTTCACCCCGGACCCCTTTCCTCACCTTCCAACAGCTGCCTGCACTACTCCCAGCTGGAGGCTTTGCGGCTGAATGGGACCAACTCCAGTGCCTTGGAGGACCCCTTCCCAAGCATcccctggagtggggaggtgaTCAGAAAGCTAAACAGCTTTGGCCTGGGGTATGTTCTCATCCTCCTGCAGTGCTTCGTGTCGTCCATGGCCAACATCTACAACGAGAAGATCCTGAAAGAAGGCGACCAGCTGACGGAGAGCATCTTCGTGCAGAACAGCAAGCTCTACTTCTTCGGGGTGGCTTTCAATGGTCTGACACTGGGCCTCCGTGAGGAGTATCGCTCCCTCACCCTGTACTGCGGCCTCTTCTACGGCCACAATGCCTACTCTGTGGCCCTCATCTTCGTCACGGCCGCCCTGGGGCTCTCAGTGGCCTTCATCCTCAAGTTCAGGGACAACATGTTCCATGTCCTTACAGCCCAGATTACCACCGTTCTCATCACAGCCTTCTCGCTCTTCGAGCTAAACTTCCGGCCTTCTCTGGATTTCTTCCTGCAGGCCCCTGTGGTCCTGCTGGCCATCTTTATCTACAACGCAAGCAAGACCCGTGACCCCGAGTACACCCTGCAGCAGGAGAAGCTCCGGGTCATCAACGGGGAGATCTTTGAGAGGTCCAGAGGGGATGGTGAAGAACTGGAGAGGCTGACCAAGCCGAACACAGACAGCGAATCCGAAGAAGAGTCTTTCTGAGCGGTAGACCGGAAGGCACAGAAGGCTGTTGGCTGGGAAAGCCAGGTCTCTTGTCTTGGTGTTGCTCTGTGAAGGCTGAGAGAGCATGTAAAACACAGCTGCAATAACTTCTGAATATCTGTGTTAAGAAATGTGTGTAGCAAACCAGTGTTTTGATATAATGGAACTCCTGCATCCCACACAGCCCATATGAATGAGAATTGAATCTATATGAGAATCTATATAGAGCAGTTCTGGAGTGAAGAAGACTATTTCCAGGATGAGGTGTTGTAGAGTGAAGGTCTGAAGGACTCTTTTTCGTTTCTAATTCAGCACCAGTAAATGCACAAAAGGTTTGGTGCTGCTGGACCAGGTTTGAGAATGCTTTAGAAAAAGCACATTTGATACTTTGTGGTTTCTGCCTATGGGAATCTGCCCAAGCCTTACcctttgtttcagtgtttcccttttttgttgtgtttttaagtaaTTAACTACCAGTGCATTAATTAAGCATATAAAGTAcaatctgtactgtactgtccaCAAAAACTAAAAGATGCTAGTACTTGGATATTATTTCATCTCCCCCTTAAAGGTGAGGAAATATTATTGAAGCCTTGAAATTAGTTTTGCTTAAAATCTCATGAAGAATGGTGCCATGATTCACTTTTGTCTCGTATCAAATTACTTaatgagtatttaaaataatgtattttttaatttgccaaAATTACATTACCAGTAGCCATTGAAGGTAGATTTTACCAACTGTGCCCATTTTTAAGATACTCGATCAAGAACTGTTGGAATGTTATCAACCATTTGTTTAAGATCACCTTATATTCCTTacgtgtacatttttaatttgtgattgacaggagcatacatttattgaaaagGAATGTCTCCAGCTGAGAATGAGCCAGCTGGTTTGGCCTTTTAGAAGTGATTGTATTTTGCTGGTAATTGCAGAATGCCAAGGTAAGAAGCATGGAGTCACATTCTGTGTCCACAATGTGTGATGGATCTTGGGTATTAGCAGCTCCTTACGGATGTATGTATTGATGCTCTTGACTGTGATTTTAAGCACATTCCTTTCTAATTACTATGGAAGGCTATGAAAGACTCTTGGTATACTTTGCAATGTTAATCTGCCTTTTGTTGAGAGGTTGTTGTGTGAGAGGTAGTGAATGTTTCTGATTATTAAGGCAGTGAAGACCAGCAGAACTCTGGGTTCAGGTCATGGTTTGCCACCAGAGATGTCTGCTTAGCATTCAATTGTTgctgttcatgtatttattgttgtctgggatatttattcattcaatggtgtaaaaataaaggttatttAATAATCATGTAACTATACAAGTCTTGCACAGCTAATTATTATACAGGTATGTAATGcagtaaatgtataataatatacataatattgtaaatgcatacaaaattgTGGGATCCAACCCTGGTCCATTCAGGGTTTTATAGGCATCTTCAATCAATTGATGAAGATCAAGTGTGTCCTGACAAAGTAGGCCtacaattgtttcaatatagtaattgagagctgggttTGAATGGAAACCAGTTGTGTTTAGTTCACAGGGTTTGTAGACCCCTTGTTTGCTTAAAACCAGAAGCCATAAAATTGATACatggattattttttctttctttctcccagGGAATCTCTCTCAAAATATTAGTAAATGGTTGTGTTAAAACAATCTGCATAGTTGGAATTTCAATATGATTGCAACTGAAAGAGGACAAGAGGAGTTTTATGAATCATGTTACAAAGTGATGCTTCAAGCCAAACTACACATCTGTTCATCCCATGAAGTTAAGTGAAgtaaaggaaaatgtgtttggGGTGATGTGTGATGCAGCGATTATGGTATTGCGGGCTTACCGAATGAACCGAATGtgaataaagatttattttcaaagataa

Function

GO:

id name namespace
GO:0034219 carbohydrate transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005351 carbohydrate molecular_function

KEGG:

id description
K15274 SLC35A5; solute carrier family 35 (probable UDP-sugar transporter), member A5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014701 True 3383 mRNA 0.44 8 27483088 27491264

Neighbor

gene id symbol gene type direction distance location
AMCG00014691 ppp2r3b,LOC108426065,LOC106581654,LOC100705877 coding upstream 145432 27321614 ~ 27337656 (+)
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding upstream 502788 26977435 ~ 26980300 (+)
AMCG00014683 asmtl coding upstream 508706 26966745 ~ 26974382 (+)
AMCG00014685 NA coding upstream 521211 26925834 ~ 26961877 (+)
AMCG00014684 upf3a coding upstream 582274 26890732 ~ 26900814 (+)
AMCG00014705 NA coding downstream 211820 27703084 ~ 27714268 (+)
AMCG00014706 NA coding downstream 352126 27843390 ~ 27861363 (+)
AMCG00014708 LOC106586788,LOC107081331 coding downstream 400587 27891851 ~ 27918923 (+)
AMCG00014711 NA coding downstream 675769 28167033 ~ 28184530 (+)
AMCG00014709 cask coding downstream 731397 28222661 ~ 28235915 (+)
G72072 NA non-coding upstream 3644 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 455816 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 529835 26952296 ~ 26953253 (+)
G71859 NA non-coding upstream 1251523 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 1472088 26010799 ~ 26011000 (+)
G72169 NA non-coding downstream 749302 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 806405 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 846027 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 1035524 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 1340492 28831756 ~ 28831975 (+)
AMCG00014687 NA other upstream 571851 26904877 ~ 26911237 (+)
G71525 NA other upstream 4627442 22855342 ~ 22855646 (+)
G71004 NA other upstream 9208728 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 9996038 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 11013879 16465621 ~ 16469209 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 344239 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 377439 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 811109 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 1305785 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 1756611 29247875 ~ 29256354 (+)

Expression


Co-expression Network