AMCG00014704 (fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458)


Basic Information

Item Value
gene id AMCG00014704
gene name fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27835503 ~ 27841871 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014704
GCAAAATGGCGGATCGCAGAGAAGGTTGGTTGtggacatgtttttgttttttggggggttagaaaagaaaccaaaccaCAAGCAGTGGTCCGGTATTCTCCTGGGATAGTCGgcatgattaaaaatatatagttctaTATGATGTAGACAGTGTTGTGCCAGTTTAGCCAATGGTACGTCAAGAAATGACAGTCACTGGTACAGCTGTGGGTAccaaaagtatttttgttttgaatgtcaaTCACATCAAAAAAATAGATGCCTCATAAATCATTTAGTTGTCAGCAACGTTTGGACAACATATCTATTTTCTGCATCTTATTATTTAACTTACACATGACTTATCATGGTCCATACGTATATGCTTTCAATGTGACTGACAtaagaatgtattaaaaactaCGATAGGGTTTGAACGTGTCCattgtatttgtgtaatttacATTATTGCAGTATAGACAAACTAGCAAAGATGGAGGTGTATTGGTAAAGATATTGATTCCTGTCCTTTTGCTTGCGCACATACGGTAtctatgtatacatacacacacaaacatacatacagcataatccaaatgcatatatatatatatatatatatcttacagGATGTTACTACTGCACACATTATCTTTCAGCAGATGCATGACACTGGGATGTTTCTCTTCAAATTTCAAatgatgttgtttgtttttgggactttaaatgcagtttaattaattatgtggCCCAACAGGATTAATCACATCCATCTTAAATAAATAGGCTACTAAACACTCCCAAATGGAAgtctaacattaaaaaaattaataacacatttaaaggcATTGAATAAATGAATTCATAAAATGAACTCCAGGTTCTTGgaagtatatatattaatactttaCTGTTGGTGGTGtttatgtaaattacaataatgaaacctgatttatatatctatttattcatgtgGGCAGGGGAGATAATGTGGAGAAATGTAAGATATTCCAGGctgtcttttgtgtttattaattaaactgagTTCCAAGTCAACCTGAAAGGCATCATTGTAGATGTGTGACCCAGTTCAATTTGAATCTTAACTTTAAGGTGACTGAAGTTAAAATGGGTTTCATCCACTTTCCCTCCTTTCAATCTCAGCGTTCACCTTAAGAGATGCTGCAGAACGCCCTTTGAAATTGAAACCCTGCTGTGGTGGAAATCAGTTTCTAGATTGGAAAGGGTTCTACTTTCATCAGTACAGAGAAGTAGCCTTTAAAAGATATCTCTTTGGTCACCCTAGTCTTTGTATTTCTATGTAggttatatttattgtttaaacacCCAAAAGAGAATTTGATTCATTCTTTATACAGCAGaactgtttgttgttgttgttttttttgtttttttaacttttcttgttttctgctAAACATCTATAGTGaagttttcagttttagttttcaaGTTGGATAATTGTTAGGATGCTTTACATTATCTTTTGATGTCCAAAGACATAGAGGTTCAGCCTGAAGGGTCTTGCCATGTAAATGTTGTCCTTATTGGAACCGccatcaaagaaacaaaactcatATGTGTACTTTTTCACTCCAAATAAAGAAGAGAGTGACGATGACTCGTATGAGGTTGTGGACCTAACAGATTATGCCCGGCGTCATCAGTGGTGGAGCCGCGTGTTTGGGCAGAATTCTGGACCTATTGCGGAGAAGTACTCGGTCGCCACTCAGATTATGATGGGAGGAGTGACTGGCTGGTGTGCTGGGTACCTGTTTCAGAGGGTGGGGAAGATTGCAGCAACAGCTATCGGTGGCGGATTCCTTTTACTACAGATTGCCAACCACAGTGGGTATGTACAAGTTGACTGGAAGAAAGTTGAAAAAGATGTTAACAAAGCCAAAAAGCACCTCAAGAAGAAGGCAAACAAAGCAGCCCCTGAGATCAACACATTCATTGAAGAGTCGACAGAATTCGTCAAGAAGAACATAGTGCTTTCCAGCGGGTTTGTGGGCGGTTTCTTGCTTGGCCTGGCATCGTAGACAACATCGATGGCCTGCCGTCATGCCGACCAGAAGAGCAGTGGATATTAACTGTGAGGATTTTCCTCTTGTTCTTCTCTGAAGGAACGGGTTAAGATTGGAGGAAGAGGGGATGCACAACATACAAATAACGGCATGCTGAGATGCTCCCCTTTTGCCGTGCCTACCAAACCGCCTCTCActataaagtaaaacatattgtTAGGTACTGTACATAGGCTGGGCTTTATGTTTCACCTTCCATTGCGCTTTTCTTTGCACCGTCATTGATGAGATCTAGATGTACAAATTACATTGAGTCATTCTGGAATTATAATTTTAACTGTGTCACACACTACTTCTCGGGGTGTCCATTTACAGGTCTAAATTATCCCGGGAATGTAcagaatctttattttttgttatgtcATTTATTGTGTGCCTCTATTTCATGatttaacaatgcaatatatgaTAGAAGAGGTGAAgttatattgttgtatttatttctgtgctggtataattattaaaaataaaatgtttttttttttaa
>TU90165
CCTGAATAGTTTAACTGCAAAATGGCGGATCGCAGAGAAGGTTGGTTGtggacatgtttttgttttttggggggttagaaaagaaaccaaaccaCAAGCAGTGGTCCGGTATTCTCCTGGGATAGTCGgcatgattaaaaatatatagttctaTATGATGTAGACAGTGTTGTGCCAGTTTAGCCAATGGTACGTCAAGAAATGACAGTCACTGGTACAGCTGTGGGTAccaaaagtatttttgttttgaatgtcaaTCACATCAAAAAAATAGATGCCTCATAAATCATTTAGTTGTCAGCAACGTTTGGACAACATATCTATTTTCTGCATCTTATTATTTAACTTACACATGACTTATCATGGTCCATACGTATATGCTTTCAATGTGACTGACAtaagaatgtattaaaaactaCGATAGGGTTTGAACGTGTCCattgtatttgtgtaatttacATTATTGCAGTATAGACAAACTAGCAAAGATGGAGGTGTATTGGTAAAGATATTGATTCCTGTCCTTTTGCTTGCGCACATACGGTAtctatgtatacatacacacacaaacatacatacagcataatccaaatgcatatatatatatatatatatatatatatatatatatatatatatatatcttacagGATGTTACTACTGCACACATTATCTTTCAGCAGATGCATGACACTGGGATGTTTCTCTTCAAATTTCAAatgatgttgtttgtttttgggactttaaatgcagtttaattaattatgtggCCCAACAGGATTAATCACATCCATCTTAAATAAATAGGCTACTAAACACTCCCAAATGGAAgtctaacattaaaaaaattaataacacatttaaaggcATTGAATAAATGAATTCATAAAATGAACTCCAGGTTCTTGgaagtatatatattaatactttaCTGTTGGTGGTGtttatgtaaattacaataatgaaacctgatttatatatctatttattcatgtgGGCAGGGGAGATAATGTGGAGAAATGTAAGATATTCCAGGctgtcttttgtgtttattaattaaactgagTTCCAAGTCAACCTGAAAGGCATCATTGTAGATGTGTGACCCAGTTCAATTTGAATCTTAACTTTAAGGTGACTGAAGTTAAAATGGGTTTCATCCACTTTCCCTCCTTTCAATCTCAGCGTTCACCTTAAGAGATGCTGCAGAACGCCCTTTGAAATTGAAACCCTGCTGTGGTGGAAATCAGTTTCTAGATTGGAAAGGGTTCTACTTTCATCAGTACAGAGAAGTAGCCTTTAAAAGATATCTCTTTGGTCACCCTAGTCTTTGTATTTCTATGTAggttatatttattgtttaaacacCCAAAAGAGAATTTGATTCATTCTTTATACAGCAGaactgtttgttgttgttgttttttttgtttttttaacttttcttgttttctgctAAACATCTATAGTGaagttttcagttttagttttcaaGTTGGATAATTGTTAGGATGCTTTACATTATCTTTTGATGTCCAAAGACATAGAGGTTCAGCCTGAAGGGTCTTGCCATGTAAATGTTGTCCTTATTGGAACCGccatcaaagaaacaaaactcatATGTGTACTTTTTCACTCCAAATAAAGAAGAGAGTGACGATGACTCGTATGAGGTTGTGGACCTAACAGATTATGCCCGGCGTCATCAGTGGTGGAGCCGCGTGTTTGGGCAGAATTCTGGACCTATTGCGGAGAAGTACTCGGTCGCCACTCAGATTATGATGGGAGGAGTGACTGGCTGGTGTGCTGGGTACCTGTTTCAGAGGGTGGGGAAGATTGCAGCAACAGCTATCGGTGGCGGATTCCTTTTACTACAGATTGCCAACCACAGTGGGTATGTACAAGTTGACTGGAAGAAAGTTGAAAAAGATGTTAACAAAGCCAAAAAGCACCTCAAGAAGAAGGCAAACAAAGCAGCCCCTGAGATCAACACATTCATTGAAGAGTCGACAGAATTCGTCAAGAAGAACATAGTGCTTTCCAGCGGGTTTGTGGGCGGTTTCTTGCTTGGCCTGGCATCGTAGACAACATCGATGGCCTGCCGTCATGCCGACCAGAAGAGCAGTGGATATTAACTGTGAGGATTTTCCTCTTGTTCTTCTCTGAAGGAACGGGTTAAGATTGGAGGAAGAGGGGATGCACAACATACAAATAACGGCATGCTGAGATGCTCCCCTTTTGCCGTGCCTACCAAACCGCCTCTCActataaagtaaaacatattgtTAGGTACTGTACATAGGCTGGGCTTTATGTTTCACCTTCCATTGCGCTTTTCTTTGCACCGTCATTGATGAGATCTAGATGTACAAATTACATTGAGTCATTCTGGAATTATAATTTTAACTGTGTCACACACTACTTCTCGGGGTGTCCATTTACAGGTCTAAATTATCCCGGGAATGTAcagaatctttattttttgttatgtcATTTATTGTGTGCCTCTATTTCATGatttaacaatgcaatatatgaTAGAAGAGGTGAAgttatattgttgtatttatttctgtgctggtataattattaaaaataaaatgtttttttttttaatgatt

Function

symbol description
fundc1 Predicted to be involved in autophagy of mitochondrion and response to hypoxia. Predicted to act upstream of or within autophagy. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial outer membrane. Is expressed in several structures, including blastomere; liver; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human FUNDC1 (FUN14 domain containing 1).

NR:

description
PREDICTED: FUN14 domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014704 False 2574 mRNA 0.37 5 27835519 27841866
TU90165 True 2621 TUCP 0.37 4 27835503 27841871

Neighbor

gene id symbol gene type direction distance location
AMCG00014705 NA coding upstream 121235 27703084 ~ 27714268 (+)
AMCG00014701 NA coding upstream 344239 27483088 ~ 27491264 (+)
AMCG00014691 ppp2r3b,LOC108426065,LOC106581654,LOC100705877 coding upstream 497847 27321614 ~ 27337656 (+)
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding upstream 855203 26977435 ~ 26980300 (+)
AMCG00014683 asmtl coding upstream 861121 26966745 ~ 26974382 (+)
AMCG00014706 NA coding downstream 1519 27843390 ~ 27861363 (+)
AMCG00014708 LOC106586788,LOC107081331 coding downstream 49980 27891851 ~ 27918923 (+)
AMCG00014711 NA coding downstream 325162 28167033 ~ 28184530 (+)
AMCG00014709 cask coding downstream 380790 28222661 ~ 28235915 (+)
AMCG00014710 cask coding downstream 409055 28250926 ~ 28280724 (+)
G72072 NA non-coding upstream 356059 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 808231 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 882250 26952296 ~ 26953253 (+)
G71859 NA non-coding upstream 1603938 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 1824503 26010799 ~ 26011000 (+)
G72169 NA non-coding downstream 398695 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 455798 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 495420 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 684917 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 989885 28831756 ~ 28831975 (+)
AMCG00014687 NA other upstream 924266 26904877 ~ 26911237 (+)
G71525 NA other upstream 4979857 22855342 ~ 22855646 (+)
G71004 NA other upstream 9561143 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 10348453 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 11366294 16465621 ~ 16469209 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 26832 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 460502 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 955178 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 1406004 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 1426458 29268329 ~ 29279149 (+)

Expression


Co-expression Network