AMCG00014729


Basic Information

Item Value
gene id AMCG00014729
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28797049 ~ 28837910 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014729
CTGCTGGCTACACTTTCCTCCAGACACAGTTACAGCACGTATCCAACAcagctctctctccttttttttcttccctttttctttttttgactGGCTACAGAAAATAATCCCTCTCCTTTAATTACATCTTGCCTGTttgcctccctctctttctctgttctgTGCTTTGGACAACTCTTCAGTTGGAAAGGCGCTCTCTGCCCAGCGGGATGAACGGAGTCTCGCCCCCAGGAGCCGAGACTGGCGAGGAATGAGATCCTTTCAGTTGTGTGTGCGTTTTTGATCATTTCTCCAGAGATGGAGTGAAGACGGCAGAACCAACTGGACTATTATCTTTGCCTTCAAACACGCGCGGTTTCTTCAGGTTGCTCTCACCCCTATTGCATGACTCCatgaagaaaagagagaggcCCAGCTTGATATGGAGGCAGCCCTCAACTGCAGCGACATATGTGACTCCAGGGACTGCACCCTTGACCCCGACATTGACACAGAAGAAGGCTGGAAGGTTCTCCACAAGCTCTGTAGACTCCTCTCTCAGAGTTCTGTCTCGGAGTCCACGATCTCTCCTGTCCTGTGTGCTGTGATGTGGACCTTGCTGTCCTGTGGGATACTGCTAGCTGCCTTCTTCCTGGTCTTCACAATCCGATTCAAGAGCAACAGGATTGTGAAAATGTCCAGCCCCAATCTCAACGTGCTGACGCTGTGTGGGAGCGTTCTGACTTGTTTTCCACAGGCACGGGTCTGGACCTTGTGCATTGGGAGCTCTCTGGTGTTTGGTCCCATCCTGGGCAAGACATGGCGTCTCTACAAAGTGTTCACCCAGCGTGTGCCAGACAAGAGGGTGATCATCAAAGACATCCAGTTGATGGGGCTGGTGGCTGGCCTGATACTGCTGGATATCCTGGTCTTGATAACATGGGGCTTCGCAGACCCAGTGCAGTGTATAAGATCAGTTGGTGCTTTAGTGAAGATCTTCGAAAGGGGCGTCTTTTATTCTGTCTCGCAGTTGGAGTCCTGTGCTTCTCTCTACACCGACGTCTGGATTGTCCTGATCTCTGTACTGAAGGGCAGTCTGCTTTTATATGGCACTTACCTGGCCGGCTTGACCAGCAATGTGAGCTCTCCACCAGTCAACCAATCCCTTACCATCATGGCCGCTGTCTTTCTCATCACTGTGTCTGCTGCTGTGGCCTTCCCTGTTACCCGGCTCCTCTACTCCTGGCCTAACTTGGTCTACAGCTttatctcaggagggattttcaTATGCACTCTGACCATCAACTGCCTTGTGTTTGTACCTCAGCTGATGCAGTGGAAGCAGTTTGAAGATGAGCTGAACCAGACTCAGGCTCAGATGGCAAAATACTTCAGCAGCCCAAGCAAGAGCATTCGCTCCATGTACAGTGAAGATGAGATTTACTACCTCCTGGGGGAGAACAGCTCCATGAAACAGCTTCTAACAGAGAAAAACGCTGTGATCGACAGCTTACAAGAGCAAGTGAACAGTGCCAAAGACAAGCTTATGAGACTGATGTCGGCACACAGCAACAGCGAGGACGATGAGTTCAACTCCGCGGTCATCCTGAATTCGGCCTCCACTCAGGTGACAGAGGTGAAACTGGAAGCCTCTTGGCAAGGGCTCGATTGCATGCAGGTGATAATGCAGCCACCTCCCTCCACAGACACAGCCTGCATCCCAGGTAGTGTGAGCCATTCACAGAAGGAACTAGAATTTTCTTCCGattctgtgaaaaatacaaagcagCCATTGAACAATGACTCAGCTCGTGAAAAGCAAAATTCCAACACAGGTGGTGCTGAAGATATGCAAGAGCAACCTCAGGCTGTTAGTCTGCCAAACAACATTACAGAAACTGAATCACGGCCCTCCTGTGACTTAAGCCCTGCCTTGCTTGTTCAATCCAGTACCACACTTGCAGAAAACTCTGGCTCTCTCAAGGATGAGTCGTTGGCCAACAAGCACAACTACGTCAGCAGTGAAAAGCTGCAGGAGATCCTCCAGGACCTTAGCATAGATGCCGTCAGCTCCCTGAGGTCACCGAACCGGGTCAGAAAAGCTCCAGTTTCTGCAAAGGCCCAAATCCAGTATTACTATTCAAGTATTTCTCCATATATCATGAGGAAAAGGAGACCCCCTTTCAATTCTGCCAGAGGTGGACCCCCTCGATATTGCTTTCCAGGGTCTGTACCCTTATGTCCAGGTCCTGCCATGAGTGGAGATCTCATCGGAACTTGTGGAAGCAATGATGCAACTCCTGAACTCGGAAGCAACACTCTGCCAGTGCAAAATCCCAATTCAAACGTTGTAAACCATTCGTTGATCACCGTCAGCGACGAAGGAGAACCCTCCTCCCATGACTCAAAGACTCTACCTCCCAGATGTGCTAAACACAAAACCAGGCACGGCAACTGTGACCTGCACATAGGATCTGCGCAGGCCCGGAGGTGTAGCATTACCCCTTTTTCAGAGTTCCACTCTCCCCACTTTCCCTCGGAAAAGGAGAACTCGCACGCAGACCAGGAGCGCTATCCGTACGATTATTCAGACACGGACTCCAGTAGCTCTGACGAGAATTATTGCTATTACCACCGGCCATACTGCAGCACCTGTTTACAGAGGCCATACGATTCCACCGAGAGCACCAGCTCTGAAACCTCAGACAGTGAGTTTGCTGCACTTCCAAATCGCTGGCGTAGGCCGCACAGTAAGAATCACCCAGTGGTCAATTTTAAAGAAGACCTAAAACCCACATTTGTATGAAAAGCTTTCTAGTTTGGCAACGTCAGACGGTGAAAAATGGTTCCTGGATTTTGGCCTGAAGTGGCCTGAAGTTAACCACGTTAATCCATAAACCTCCTTTGTATTTTGTCACTTTGGCAATGAAAATGATgacatttcattatatttaccttctaattagtttaatttttttttactgctgccCCGATGAGATtagaattgttttgtgtttctcaggATTATGCTGTTAGGTTGATGCTCCAgtcctttaataaaatgttgaatgtttgcCTCTTTATCTGACACATCACAAACCCTTTCAATTATGTATAAGGTCTGAAGGGATTTACAATTTACATGGTCTGATCCTTTACTATTACATTATTCAGGAAGACGCACCTTAATGTGCATTTCAGTCTAGAAGGAGGAGCTCTGTCTGaatttatataataatctaCTATCTTCCATTAGAGCTGTTTATACCATCAGTtgttataaaattgtatattgaTGATTACATATCCctttatgtattgtttacttTGGTAAAAAGCTAAGAACGTATTGttcaaaaacatattcaaattcCCTATACCCTTTGATTCAATCCTACGTTTTAAGAATAAAACCATTCTTTTTTTACTATATagaaattatttttgtgaagtcACTAATTCAGTATGAGATTTTCATCTTCCCTGTGCAAATCATGCACTTTTCCACTGTGGTTTAGGAGCCAGCTAAATTAAGCTTGAAATGTTTATGACAGTTCTCCAGCTGGacagaagcaaataaaacatttattttagctaGTAGCAGCAATATGATACCAAACGCATCAACTCAGCCTCGAATAATCAATGTGGTATCTCCTTTAAGTATGAGTAAGCCACTTATTGACACCACTGTAATTTTAGAGATGtttccaaagaaacaaaacgATTAGCCTTTCCTTTTATCTGGTGTACTTCAGATAAGTGCTAAAATAGTTTTCCAATTAGAGGAACTGAAGAAGTTCTGTAAAGCGATTGACCATGAAGTGGTTTAACACAAACTTCAACAAAATGTCTCCCTCAATGGCAGCTTTATGTTCACCATAGATATTTCTTGTGTGTACCCAGCTGAAAACTACCATCATTTATAactggcatttttgttttttattcaatgtGGCACTAACTTCTTGTTAAGTTATGTATATTGtcattaatgtaaaaaaatgtttatttgtgcttAATTGAGAGGATTTAATTTATATCTAGCATTATCTTTTTCGTTTTTTGCCtacattgtttgatttgttgttgttgtttgttttctttgtgtcctataatatgttataatatgaattttgcattataa
>TU90400
ACTCTCCCCACTTTCCCTCGGAAAAGGAGAACTCGCACGCAGACCAGGAGCGCTATCCGTACGATTATTCAGACACGGACTCCAGTAGCTCTGACGAGAATTATTGCTATTACCACCGGCCATACTGCAGCACCTGTTTACAGAGGCCATACGATTCCACCGAGAGCACCAGCTCTGAAACCTCAGACAGTGAGTTTGCTGCACTTCCAAATCGCTGGCGTAGGCCGCACAGTAAGAATCACCCAGTGGTCAATTTTAAAGAAGACCTAAAACCCACATTTGTATGAAAAGCTTTCTAGTTTGGCAACGTCAGACGGTGAAAAATGGTTCCTGGATTTTGGCCTGAAGTGGCCTGAAGTTAACCACGTTAATCCATAAACCTCCTTTGTATTTTGTCACTTTGGCAATGAAAATGATgacatttcattatatttaccttctaattagtttaatttttttttactgctgccCCGATGAGATtagaattgttttgtgtttctcaggATTATGCTGTTAGGTTGATGCTCCAgtcctttaataaaatgttgaatgtttgcCTCTTTATCTGACACATCACAAACCCTTTCAATTATGTATAAGGTCTGAAGGGATTTACAATTTACATGGTCTGATCCTTTACTATTACATTATTCAGGAAGACGCACCTTAATGTGCATTTCAGTCTAGAAGGAGGAGCTCTGTCTGaatttatataataatctaCTATCTTCCATTAGAGCTGTTTATACCATCAGTtgttataaaattgtatattgaTGATTACATATCCctttatgtattgtttacttTGGTAAAAAGCTAAGAACGTATTGttcaaaaacatattcaaattcCCTATACCCTTTGATTCAATCCTACGTTTTAAGAATAAAACCATTCTTTTTTTACTATATagaaattatttttgtgaagtcACTAATTCAGTATGAGATTTTCATCTTCCCTGTGCAAATCATGCACTTTTCCACTGTGGTTTAGGAGCCAGCTAAATTAAGCTTGAAATGTTTATGACAGTTCTCCAGCTGGacagaagcaaataaaacatttattttagctaGTAGCAGCAATATGATACCAAACGCATCAACTCAGCCTCGAATAATCAATGTGGTATCTCCTTTAAGTATGAGTAAGCCACTTATTGACACCACTGTAATTTTAGAGATGtttccaaagaaacaaaacgATTAGCCTTTCCTTTTATCTGGTGTACTTCAGATAAGTGCTAAAATAGTTTTCCAATTAGAGGAACTGAAGAAGTTCTGTAAAGCGATTGACCATGAAGTGGTTTAACACAAACTTCAACAAAATGTCTCCCTCAATGGCAGCTTTATGTTCACCATAGATATTTCTTGTGTGTACCCAGCTGAAAACTACCATCATTTATAactggcatttttgttttttattcaatgtGGCACTAACTTCTTGTTAAGTTATGTATATTGtcattaatgtaaaaaaatgtttatttgtgcttAATTGAGAGGATTTAATTTATATCTAGCATTATCTTTTTCGTTTTTTGCCtacattgtttgatttgttgttgttgtttgttttctttgtgtcctataatatgttataatatgaattttgcattataaa

Function

GO: NA

KEGG:

id description
K04617 GPR156, GABABL; gamma-aminobutyric acid type B receptor-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014729 True 4126 mRNA 0.44 10 28797049 28837909
TU90400 False 1629 lncRNA 0.35 1 28836282 28837910

Neighbor

gene id symbol gene type direction distance location
AMCG00014725 lrrc58,LOC106574305 coding upstream 17759 28767435 ~ 28779290 (+)
AMCG00014726 LOC103028151 coding upstream 30959 28695811 ~ 28766090 (+)
AMCG00014723 NA coding upstream 187862 28591078 ~ 28609187 (+)
AMCG00014724 NA coding upstream 206089 28583469 ~ 28590960 (+)
AMCG00014720 NA coding upstream 313199 28456195 ~ 28483850 (+)
AMCG00014727 gsk3b,LOC107703010 coding downstream 44007 28881917 ~ 28890968 (+)
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding downstream 67991 28905901 ~ 28916634 (+)
AMCG00014734 NA coding downstream 258219 29096129 ~ 29110638 (+)
AMCG00014733 NA coding downstream 283041 29120951 ~ 29129042 (+)
AMCG00014737 NA coding downstream 470030 29307940 ~ 29321592 (+)
G72273 NA non-coding upstream 218316 28526788 ~ 28578733 (+)
G72208 NA non-coding upstream 455332 28337291 ~ 28341717 (+)
G72173 NA non-coding upstream 496236 28297669 ~ 28300813 (+)
G72169 NA non-coding upstream 499565 28240566 ~ 28297484 (+)
G72072 NA non-coding upstream 1317605 27475064 ~ 27479444 (+)
G72341 NA non-coding downstream 81066 28918976 ~ 28921290 (+)
G72353 NA non-coding downstream 143212 28981122 ~ 28985576 (+)
G72354 NA non-coding downstream 151697 28989607 ~ 28991299 (+)
G72409 NA non-coding downstream 299219 29137129 ~ 29137353 (+)
G72415 NA non-coding downstream 319115 29157025 ~ 29160425 (+)
G72175 LOC102776245 other upstream 492976 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 917249 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 955178 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 1885812 26904877 ~ 26911237 (+)
G71525 NA other upstream 5941403 22855342 ~ 22855646 (+)
AMCG00014739 NA other downstream 409965 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 430419 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1005557 29843467 ~ 29846586 (+)
G72605 NA other downstream 1013540 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1926441 30764351 ~ 30812287 (+)

Expression


Co-expression Network