AMCG00014730


Basic Information

Item Value
gene id AMCG00014730
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28930365 ~ 28951352 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014730
ATGTCCGAGAGTGCAGGCTGGGAGAAGACCGGGAACGAGTCTTTGGAGAAAGGGCCACAGGAAGAGGTGGGCCAGAGCTGTGACTGCACCctgttgggggagggggaagaggaggaggaggaggaagaaccagatgatgatgacgatggaGAGTCCAAATTGTGCCGGGTCTGTGGAGACAAGGCTTCGGGTTACCATTTCAACGCCATGACCTGTGAGGGCTGCAAAGGTTTCTTTCGacGTGCTATGAAGCGCCACATCCAGTTCAGCTGCCCGTTCCAGAACGCGTGTGTCATCACCAAGTCTAACCGCCGTCAGTGCCAGGCCTGCCGCCTACAGAAGTGCCAGGACATAGGCATGCTCAAGGAGTTGATTATGTCTGACGAGGCAGTGGAGCACCGTAGGGCACTaatcaagaagaagaagaagcaagTTCACAAGGAGCCACAGCTCTCTGAAGAGCCCAGCCTCACTCCACAGCAGGAGAATCTCATTCAGGAGCTTCAGGAGGCCCATAGAAAGACCTTTGACATCACCTTCTCTTGCTTCAAGCATTTCAGGCCCATCAATCGGACATCCTCCCTGGGGAGGCAGGATTACATCAGCTCCACACCTGTCAGCACCAGCCATAAGCAGCCAACTGAGTCTCAGGACGCGGGAACGAGCAGCCACCAGACCCAACTCCCGGGACTCTTGATTGAAGACCAGATTTCGCTGCTGAAAGGCGCAACGTTTGAAGTATGTCAGATCCGTTTCAACATGGTGTTCAATGAGGAGACGGCGACCTGGGAGTGCGGACCTCTGATCTACCATATGGAAGACGCTGCCCGTGCTGGGTTCCTGCCCCACCTGCTAGACCCCCTGATGAAGTTTCACTACACCTTGCGCAAACTGAAACTACAAGAATCAGAGTACATGCTTATGCAGGCgatctctctcttctctccagACCGCCAAGGTGTCTCACAGAATAAGGTCATTGACAGGTACCAGGAGATGTATGCTTTGACGTTAAAGGCTCACATTGAGACTACAAGAACTGGTAACAAACATCTGTTTCCCAAGATCATTGCCTGTCTGACCGAGCTGCGAACGATGAATGAGGAGTATACCAAGCAGGTGCTGCAGATCCAGAACATCCAACCAGACGTCACCCCTCTCATGATAGAGGTCTTCAGCAAGGACCCAGAGTGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005488 binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG:

id description
K08540 NR1I2, PXR; pregnane X receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014730 True 1194 mRNA 0.53 8 28930365 28951352

Neighbor

gene id symbol gene type direction distance location
AMCG00014718 NA coding downstream 435339 28494507 ~ 28495026 (-)
AMCG00014719 NA coding downstream 435879 28494106 ~ 28494486 (-)
AMCG00014717 NA coding downstream 439802 28487629 ~ 28490563 (-)
AMCG00014716 usp9x,LOC108272755,LOC107595873 coding downstream 550312 28341151 ~ 28380053 (-)
AMCG00014715 ddx3x,LOC108412429,LOC102776245,LOC107564811 coding downstream 614967 28289355 ~ 28315398 (-)
AMCG00014731 NA coding upstream 44584 28995936 ~ 29013055 (-)
AMCG00014732 NA coding upstream 72426 29023778 ~ 29031908 (-)
AMCG00014735 NA coding upstream 400396 29351748 ~ 29383448 (-)
AMCG00014742 sik1,LOC105911651 coding upstream 502690 29454042 ~ 29463876 (-)
AMCG00014744 NA coding upstream 538713 29490065 ~ 29507061 (-)
G72334 NA non-coding downstream 109289 28820820 ~ 28821076 (-)
G72324 NA non-coding downstream 151072 28776227 ~ 28779293 (-)
G72323 lrrc58,LOC102790154 non-coding downstream 154628 28775281 ~ 28775737 (-)
G72318 NA non-coding downstream 162036 28767600 ~ 28768329 (-)
G72317 NA non-coding downstream 164276 28674381 ~ 28766089 (-)
G72375 NA non-coding upstream 38113 28989465 ~ 28991220 (-)
G72414 NA non-coding upstream 195491 29146843 ~ 29147168 (-)
G72423 NA non-coding upstream 237338 29188690 ~ 29189044 (-)
G72438 NA non-coding upstream 266428 29217780 ~ 29218033 (-)
G72472 NA non-coding upstream 398726 29350078 ~ 29351654 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 597883 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 1560838 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 1625768 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 6685450 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 9705135 19217722 ~ 19225230 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 437938 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 1890171 30841523 ~ 30846800 (-)
G73047 NA other upstream 3311815 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 3503954 32455306 ~ 32555945 (-)
G73127 NA other upstream 3646110 32597462 ~ 32619149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014675 thrb coding NC_007130.7 CM002903.2 17514631 ~ 17658253 (-)
grasscarp (Ctenopharyngodon idella) CI01000129_01460292_01463386 NA coding CI01000129 null 1460149 ~ 1463386 (-)