AMCG00014738


Basic Information

Item Value
gene id AMCG00014738
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29268329 ~ 29279149 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014738
ACTGTCTCTGAAGTGAGCACTGTGCCCCACAATGGCAGTGAACACAGAGTCTATCTGCTGACCTGCTCCGTCACTGGCAGACCGGCTCCCACCGTGTCCTGGAGTACTGAGAGACACGATGTCATAGAGGATTCTCAGCAGTTCACTGTCACCAACCCCAATGatgtcATCAAGAACCAGGATGAGGAAAACCGCCAGCTAAAAgagaCCAGTCACCAGTCAAAGTGACTGATGAAAATAACAGttttaatgatGATGGAAGTCTGTCAAAGGCATTTAAAACCTCTTCTCCTCTGACAACAAATAACTCTACTGATCAGACACATCTATCAAATGAGAAATTTAAATCAACCGGCTCTACTATGAGGAAGAGGAATAAGGATAAGGAAAACCGAAAACCTAGATCTTCTCACCCTACCTGTAAACGGGGCTTGGAATACCGATGACTGTCAAAAGCACTGAGGATCACACATTTGTAATGATGTCTGTGGAGCCTTTTACACAATTGGAGCACAATTGTCAGGAAATTTAGATTTTATGCTAGCAAGCAAAGGACAGACTGTGCAGGGTagacaggaacaaaaaaaaaatggcaaaagaaaactgaacaaaaaaaaacaaaactcaatacAATAGGAGAGGGGGAAAtaacaataactttttttttataatcataaTCAATCATGTTATATAACCTGACTATGAAATTCCTTAAATGTATCCAGAATTCTATAAACACCTGTCACTGGTAGcacattatttaattcagttaattctGTATGTAGCTAagcaattgtttaaaaatgttagtgTTTCTGAGGCATATGACTTTGAATAGGTTTTTCACACGTGACTTTCAACATAACACATGATGCTGCTGAGTAATTTTGCTCTGGTATGTTTAAAGTCGTAAAGGTATCATTTTAGTAGGACATTTCATTGGGATtcagcgatggactggcgtcccgtcctgggtgtattcctgccttgcaccttatgcctgccaggatcggctcTGGCATCCCCCgcgacccacatggataagcggttttgaaaatggatggatggatggatggatttcaTTGGGattatagtaatagtaataaagcTTGCTAGTAACGTTGATAATATGagctggattaaataaaaactgttacccacccactaatagatgTACTACTTATTCTCTGGAGAGTTTATATAGTACTTAGAATTGAggatgaaatatgaaaatatcaaCTTTATCTTAATACTATTCAGAAGACATAGATCTACTCCCAgctgtaaactgtaatttaGACATCTGAATACAACACAGAATTGGGGATTTTACTCAGTATGTTTATCAGTCTTTACAGGTTTCTACAGTATGTGCTGTGAACACTGATTAACCATAGAACAGAGCATTTGTCTAATTTacaggaagattttttttttttttaatggaactAGAGCAAAATTAGAAGAAACTTTTTGTATGAAAGTCtgtattgtatatgttttttttttt
>TU90543
ggcatttttaaatttcacttcCACTTTCACTTCTCAGTCTGAGTTGGCCCTCCTTCTGGAACAAGTGATTGGTTGGTGTAGCTGTGCTGCAATAGTTACACTAATGAAGGCGGTAATTTTGAATTTGCACACACATGCCGTTGATTTACAAAGAACAGTGTAAGCTAGTTTTAGTTGTATGATATCTTCATTTTTCCGTCATGACTCCTGTggtaaaatatgtgttttggcTATCGGCAATTACAGCTCATGCTTCCTCAGAG
>TU90544
CAATGTTGTACCTATTTTTCAGTCGTGACTCCTAtggtaaaatatttgtatttaatatcaGTAATGACAGCTCATGGACTGTCTCTGAAGTGAGCACTGTGCCCCACAATGGCAGTGAACACAGAGTCTATCTGCTGACCTGCTCCGTCACTGGCAGACCGGCTCCCACCGTGTCCTGGAGTACTGAGAGACACGATGTCATAGAGGATTCTCAGCAGTTCACTGTCACCAACCCCAATGGTTTTCAGAGTGGATACAAATGCTTCCTCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014738 True 1510 mRNA 0.38 7 29269638 29279149
TU90543 False 263 lncRNA 0.40 2 29270851 29272518
TU90544 False 273 lncRNA 0.47 3 29268329 29272518

Neighbor

gene id symbol gene type direction distance location
AMCG00014733 NA coding upstream 139287 29120951 ~ 29129042 (+)
AMCG00014734 NA coding upstream 157691 29096129 ~ 29110638 (+)
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding upstream 351695 28905901 ~ 28916634 (+)
AMCG00014727 gsk3b,LOC107703010 coding upstream 377361 28881917 ~ 28890968 (+)
AMCG00014725 lrrc58,LOC106574305 coding upstream 489039 28767435 ~ 28779290 (+)
AMCG00014737 NA coding downstream 28791 29307940 ~ 29321592 (+)
AMCG00014741 LOC106586690,LOC106582147,LOC106575755 coding downstream 104339 29383488 ~ 29398221 (+)
AMCG00014740 LOC107557921 coding downstream 121483 29400632 ~ 29421379 (+)
AMCG00014736 cryaa coding downstream 152372 29431521 ~ 29437107 (+)
AMCG00014743 NA coding downstream 261382 29540531 ~ 29558701 (+)
G72426 NA non-coding upstream 76051 29191971 ~ 29192278 (+)
G72415 NA non-coding upstream 107904 29157025 ~ 29160425 (+)
G72409 NA non-coding upstream 130976 29137129 ~ 29137353 (+)
G72354 NA non-coding upstream 277030 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 282753 28981122 ~ 28985576 (+)
G72767 NA non-coding downstream 1557687 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 1562411 30841560 ~ 30844670 (+)
G72769 NA non-coding downstream 1567013 30846162 ~ 30846421 (+)
G72783 NA non-coding downstream 1676756 30955905 ~ 30956284 (+)
G72789 NA non-coding downstream 1724223 31003372 ~ 31003788 (+)
AMCG00014739 NA other upstream 11975 29247875 ~ 29256354 (+)
AMCG00014729 NA other upstream 430419 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 964256 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1388529 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 1426458 27835503 ~ 27841871 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 564318 29843467 ~ 29846586 (+)
G72605 NA other downstream 572301 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1485202 30764351 ~ 30812287 (+)
G72785 fam160a2 other downstream 1699067 30978216 ~ 30978825 (+)
G72786 NA other downstream 1700421 30979570 ~ 30980252 (+)

Expression


Co-expression Network