AMCG00014742 (sik1,LOC105911651)


Basic Information

Item Value
gene id AMCG00014742
gene name sik1,LOC105911651
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29454042 ~ 29463876 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014742
GCCCGGCCTTGCGCCCTGTTCGAAACTCTGACGCGGGTGTGACGTCAATGAGGCAGGTATCAATTTGTTATGGCAGGGAGGCCGGGGGAGGAGTTCCCAGCTGAGTATTAGATTGTAGCTTTCCGCATGCCAGTGGAGCTCACAAACCCGGGATACCATGTAGCCAGAAGTGAAGCACAGTACCAAAAAACTAGTTGTACATAAACTCTGGCCATACTGTGTACCATTTATGAGTCTGGCCTACAAGTTGTGTACTTCTtgaaatatattgtgtattataATATCCATGAAGTGATTTGACCTGGGCTACCAACAGAAGAAAAGCAGCCCAAGTGCGGAATAAGGAGTGTGTATGTCCGTTAAGACAAAACCACCTGGAATACGGAAGACAGAGCCCGACACACGCCATGGTGATCATGCCGGAATGTACCGCGGAGTCGCTCCCCAGCCACCCGCCTGGAAGGCCCTTACAGGTCGGGTTCTACGAGATCATCAAGACCCTGGGGAAAGGCAATTTCGCCGTTGTCAAACTTGCCAGGCATAAAGTCACCAAGACACAGGTCGCCATCAAAATCATTGACAAGACCCGATTGAACTCTTCCAACCTTGAAAAGATctacagagaagttcagatcatGAAGCTGCTGAATCACCCGCACATCATAAAGCTTTATCAGGTTATGGAAACCAAAGATATGCTGTACATTGTAACGGAATATGCGAAAAATGGAGAAATGTTTGATTATCTGACATCTAACGGCCGCCTGAGTGAAGAAGAAGCCCGCAAGAAGTTCTGGCAGATTTTAATGGCTGTGGATTACTGCCACAGACATCACATTGTTCACAGAGACCTAAAGACTGAGAATCTACTGCTGGACGccaatatgaatattaaattagCAGacTTTGGCTTTGGGAACTTCTATAACGCCAGGGAGCCCCTCTCTACGTGGTGTGGGAGTCCACCTTATGCTGCTCCCGAGGTCTTTGAAGGCAAGGAGTATGAAGGACCCCAACTTGATATTTGGAGCTTGGGAGTAGTCCTGTATGTCCTGGTCTGTGGATCTCTGCCATTTGATGGAGCCAGCCTGCCTGCCCTCAGACAAAGGGTGTTGGAGGGGCGTTTTCGCATTCCTTTCTTTATGTCACAAGaCTGTGAGAACCTGGTGCGGAGGATGCTGGTAGTGGACCCTGCGAAGCGCATCACCATTGCCCAGATCAAGCAGCACCGCTGGATGCTGGCTGACCCCACAGCTCAGCAGCAGGCAGTTTCTGTGTCCCTCAGCGACTACAACTCCAACCTGGGCGACTACAGCGAGCCGGTGCTGGGCATCATGCAGAATCTGGGCATTGACAGGCAGAGAACCATCGAGTCGCTTCAAAACAGCAGCTACAACCATTTTTCGGCCATTTACTACCTGCTACTGGAGAGAGTGAAGGAGCACCGAAACAGCCAGCTGACTCGGCAGTGCGGCCCCTGGACTCATAGACCACGGAGCAGCTCGGAAATGACTCCTGCTGAGGTGCCTCAGGAGTGCTCAGACAGTTTCAGGACAGCCTTCCCCTTCCCGACGCTGAAGAGCTTGCCCTGTCATTGCGACTCTGAAAGCGACTCCACTGGCTTGTTCCAGCGGGTGGTGTTTCCGGTTGAGGCCAGTTTCAACGGACTGCTGCGCAATCGCTCCATCTCGCCCAACAGCCTCCTGGAGACCACCATCAGCGAGGAGGTGCGGCCCGGGGacctggaggaagaggaggggctTATGGTTGCCACACCCCCTCTTCCCCCCAATAACAATTCCCGGAGACACACGCTGGCTGAGGTCTCCGCCCACTTCCACCAATGCAGCCCTCCCTGTATCGTAGTTTCCTCGGTAAGCCCCTCTGACGGAGCCTCTTCTGACAGCTGCCTGAAGTCATCTTTGCTTGCTAGGCCTGCCCTGGGCGAGGGAGGCCACTCCACCCTCCTGGCATCAACCATGGGACCAGGTACCTCTGGTCAGACTGGTGCGCCCTTCACCCAGTCCTCCACCCTGCTGCTGCAAGCCCAAGGCTGCCACATCACCACCAGCATGCCGGGCGCCAATTTCCAAGAGGGTCGCAGAGCGTCCGACACCTCGCTCACTCAAGGGCTCAAGGCATTTCGGCAGCAGCTGCGGAAGAGCACGCGCTCCAAGGGCCTCCTGGGACTCAACAAGATCAAGGGCCTGGCCAGGCAGGTGTGCTCCCCGTCCCCCAGCCCGCGGTCGGCCCGCTCCACCCTCAACCCTTCCCTCTGTGTGTCTACGGGCCTCCCCGCCACTGGAGGCAGCCGAGACCGCAGGAGCCTCCTGGAGGAAGTGCTGTATCAGCAAAGAATGCTTCAAATGcaacaccagcagcagcagcaacaacagcccACCGTGTTCGCCAGCCATCAAGCAGCTGTCCCCTGCCCGGGCCTGTTCCCCACCTCTGCTGTGGTTCCCACCCCCGCCCCCGTCTACTCTTTCCTGCGGGCAGACGCACAGCTGCAGCCCCCCAGCAGCAGCCCCATGCTCCACTTCCCCCAACTGCACACGGAGTCGCGGGTGCACTCGGCCGCCCACCTGCTTGAGACCCATCTGCACATACATGGTGGCGCCTCCTACCTGCCCCACCTATCCTATCAGCTCCAAGGCTGTGAGCTCTCTCAATTGGCTGACTGCGAAATGGAGGACCTCACCAACAGAGAGCTGAGTAATTACGTGCTGGTAAAATAGACacctataaaaaaaatctggaaaaatatCGAATACGTATCTTGTTGACTAACACAGGCTTGGACTTCCGCCAGctttctgacacacacaaaccttgttttttttttttttttggttagactctttatttaacaaaaggaaaaggaaaaaaaaaaagagcaa

Function

symbol description
sik1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in cellular response to glucose starvation; intracellular signal transduction; and protein phosphorylation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 30. Orthologous to human SIK1 (salt inducible kinase 1).

NR:

description
Si:ch211-235e18.3 protein, partial

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K19008 SIK1; serine/threonine-protein kinase SIK1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014742 True 2903 mRNA 0.54 14 29454042 29463876

Neighbor

gene id symbol gene type direction distance location
AMCG00014735 NA coding downstream 70594 29351748 ~ 29383448 (-)
AMCG00014732 NA coding downstream 422134 29023778 ~ 29031908 (-)
AMCG00014731 NA coding downstream 440987 28995936 ~ 29013055 (-)
AMCG00014730 NA coding downstream 502690 28930365 ~ 28951352 (-)
AMCG00014718 NA coding downstream 959016 28494507 ~ 28495026 (-)
AMCG00014744 NA coding upstream 26189 29490065 ~ 29507061 (-)
AMCG00014748 eif5b,LOC107567794 coding upstream 151645 29615521 ~ 29643703 (-)
AMCG00014750 NA coding upstream 186562 29650438 ~ 29651309 (-)
AMCG00014749 NA coding upstream 194397 29658273 ~ 29659385 (-)
AMCG00014756 unc50,LOC107672653 coding upstream 371375 29835251 ~ 29841157 (-)
G72495 NA non-coding downstream 30670 29421260 ~ 29423372 (-)
G72472 NA non-coding downstream 102388 29350078 ~ 29351654 (-)
G72438 NA non-coding downstream 236009 29217780 ~ 29218033 (-)
G72423 NA non-coding downstream 264998 29188690 ~ 29189044 (-)
G72414 NA non-coding downstream 306874 29146843 ~ 29147168 (-)
G72535 NA non-coding upstream 96662 29560538 ~ 29562066 (-)
G72530 txndc9,LOC107568936,LOC107668903,LOC106586783 non-coding upstream 183712 29647588 ~ 29649642 (-)
G72581 NA non-coding upstream 275331 29739207 ~ 29743212 (-)
G72629 NA non-coding upstream 482841 29946717 ~ 29947061 (-)
G72642 NA non-coding upstream 504779 29968655 ~ 29982575 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 55737 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 1121560 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 2084515 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 2149445 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 7209127 22225924 ~ 22244915 (-)
AMCG00014775 NA other upstream 1377647 30841523 ~ 30846800 (-)
G73047 NA other upstream 2799291 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 2991430 32455306 ~ 32555945 (-)
G73127 NA other upstream 3133586 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 3331129 32795005 ~ 32806295 (-)

Expression


Co-expression Network