AMCG00014748 (eif5b,LOC107567794)


Basic Information

Item Value
gene id AMCG00014748
gene name eif5b,LOC107567794
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29615521 ~ 29643703 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014748
GCCTTTGCGACCATATGTGCGGCTGAGAGCTGAGCATCGGTGAGCGGCGAGGAATTGAGTTTAACACAGTGAATCCACCATACAGGGACAATGGGcaagaagcagaaaaacaaagggGAAGACAGCAGCAAAGACGACATTGACATCGATGCCCTGGCTGCTGAAATAGAAGGAGCCGGTGCCGCCAAGGAGCAGGACTCCTCCAAGGCCaaagggaagaagaagaagggtgGCAAGAAGAACCAGGAGTTTGAcGAGGATGATATTCTCAAAGAGCTAGAAGAACTCACATTAGAAAACCGAGGAGCCGCATCTAAGGAAGCTAAGAAACCAGACGCCGCAGAGGAAGAGGCAGAGCCGTTCCCGTTCAAGGCGGAAAAGAAGAAGACCCGCAAAGGCAATAAGAAGACCAGCGTGGacgaggatgaggaggaggaccAGGGTACTAATGACATGGAAGATGACGGCAGGAAAGCCAAGAAGGAGGCCAAGTCGGGACAAACTGCTCCTCCTGTTGGTGCTTCTGACTCTGAGGACGATGACACCAGGGCAGCCAAAAAGGGCAAAGGGGGAAAGAAGGGGGCCAGGAAAGAGCCCTCAGACTCGGACGATGAGGATCGTGGTGCGAAGGGCAAGCAGGCGGGCTCGGCGGGCGACAGCGAAGACGACTCGGACGATTTCTCTCAGGGAGGCAAGAAGGTCCAACGCAAGAACCAGAAGGCCAAAGCTGGAAAGGTATACAgtggtggggaggaggaggaagaggacacGGGAGCCTTTAAGATGAAGACGGCGGCGCAGAAGAAGGCCGAGAAGAAGGAGCGGGAGCGCAAGAAAAAGGAGGAGGACAGGGCCAAGCAGAAGAagctgaaggagaaggagaaggaagaggaggagaaaaaggcCAAATTGACCGAGGTGCCTAAGAATGGAGAAGCCAAGGAAGCGGATACTGCAGCGACTCCCAACGATGAGAGTAAGAAACTAGAGAGTGCTGTGTCGCTGGAGAAGGAGGGAGCAGAAGCCTTGGGAGAGGAGGATACCGAAGGTGGggacaagaagaagaaggataagaagaagaagaagggcgagaaggaggagaaggacaAGACCAAGAAAGGCCCCAGCAAAGCGACTGTCAAGGCCATGCAGGAGGCTCTAGCCAggatgaaggaggaggaggagcgcgCCAGGCAGGAGGAAGAAGAGCGGGTGCGGCgtctggaggagctggaggcccAGAGGCTGGAACAGGAGAAACTGGagcaagaaaggaaagaaaagaagaagcagaaagagaaagaaaggaaggagcGCTTGAAGAAGGAAGGGAAGCTGCTGACCAAAACACAGCGGGAGGCCCGTGCCAGGGCAGAAGCCACGCTCAAACTGCTCCAAGCACAGGGTGTTGAAGTGCCATCCAAAGACTCCATGCCAAAGAAGAAGCCTGTGTATGtggacaagaagaagaagaagcagccCACACAACAGCAGACCCCAGATGAACGAGCAGTGACTTCTCCTACTGCAGAAGCTGCACAGCCCATCACTGTAGAGACCAAAGTGGAGGCTCCAAAAGTTGAGAAAGTtgTGAAGGAGCAGAAAGCCGAGGCAGATTTGGACGACTGGGAGGCCATGGCCAGCGATGAGGAGAAGGAAATGAAAAAGGTCCACATTGAGGTGAAGGAGACggagcagcaacagcagcaggaagaggagggcagcgaggaggaagaggacgaggaggacgaggacgaggatgaagagagcgaggaggaggaagaggaggaaggcTCGGAGGGGAAGGAGGCCCAACCATCCGAGGCCAAGAGGCCACCGGGCAGGAGGACCAGCAAGGACGTCAGCTCGGActcagagagcgagagcgacTCGGACGACGGTCGCACCAAAGAGGAGCGGCTGTACGACCGGGCCAAGCGGCGTATAGAGAAACGGCGGGCCGACAACCTGAAGAATACCAATCTAGAGAAACTGCGGTCTCCCGTCATTTGTGTGCTAGGCCACGTAGacactggaaaaacaaagatTCTGGATAAGctgcGCCACACACATGTGCAAGACGGTGAAGCAGGTGGTATAACTCAGCAGATTGGCGCTACCAATGTCCCCCTGGAGACCATTGTGGAGCAGACAAAGATGGTGAAAAATTTTGAAAAAGAGATTATCAAGATCCCAGGCATGCTGATCATTGACACACCGGGACACGAGTCCTTCAGTAACCTGAGGAATAGAGGGAGCTCGCTGTGTGACATTGCCATCCTGGTGGTCGACATCATGCACGGACTGGAGCCCCAGACCTTGGAATCCATCAATCTGCTGAAGGAGAAGAAGTGCCCCTTCATTGTAGCTTTGAACAAGATCGACAGGTTGTACGACTGGAAGAAAAGCCCGGACACGGATGTTGTGGCCACTctgaagaaacagaagaagaacACGAAGGACGAGTTCGACGAGAGGGCCAAGGCCATCATTGTGGAGTTTGCTCAGCAGGGGCTGAACGCAGCTCTGTTCCACGAGAATAAGGACCCTCGTACTTTCGTTTCGCTGGTGCCCACCTCGGCCCACACAGGCGACGGCATGGGCAACCTGATCGCGCTGCTCGTGGACCTGACGCAGACCATGCTGGCCCGCAGACTGGCACACTGTGATGAGCTCAGGGCACAAGTCATGGAGGTGAAAGCTCTCCCTGGGATGGGCACCACTATCGATGTGATCCTGATCAACGGTGTGCTGCGGGAGGGGGAGACCATCATTGTTCCTGGGGTGGAGGGGCCCATTGTCACCCAGATCAGAGGGCTGCTGCTGCCCCCGCCCCTCAAAGAGCTGCGTGTCAAGGGGGTGAAGATCCTGGGGAAGGACCTGGAGAAGaccctggctggcctgcctctGCTGGTGGCACACAAGGAGGATGAGGTCCCTGTGCTGAGGGACGAGCTGATCCGGGAGCTGAAACAGACGCTGAACTCCATCAAGCTGGAGGAGAAGGGGGTGTACGTGCAGGCCTCCACCCTGGGCTCCCTCGAGGCCTTGCTGGAATTCCTCCGAACGTCCAAAGTGCCATACGCAGGAATTAACATCGGCCCCGTTCACAAGAAGGATGTCATGAAAGCATCGGCTATGCTGGAGCATGACCCTCAGTACGCCGTCATCCTGGCGTTCGACGTGAAGATCGAGAGAGACTCCCAGGAGCTCGCCGACAGCTTAGGCGTGCGCATCTTCAGTGCCGAGATCATCTACCACTTATTCGACGCCTTCACAAAGTACAGGGAAGACTACAAGAAACAGAAGCAAGATGAGTTCAAGCACATCGCCGTGTTCCCCTGCAAGCTCCGAATCCTGCCTCAGTTCATCTTCAACTCCAGGGACCCCATAGTGATGGGGGTGACAGTGGAGGCCGGGGTGATTCGGCAGGGCACCCCGCTCTGTGTGCCAAGCAAAGGATTTGTCGATATTGGGATTGTCACCAGTATTGAAGTAAACCACAAGTCAGTGGAGAGTGCCAAGAAGGGTCAGGAGATCTGTATCACCCGGCAGTCCATCGACGCTCTGAAAGACTGGTTCAGGGACGAGATGCAGAAGTCGGACTGGCAGCTGATCATGGAGCTGAAGAAGACCTTCGAGATCATCTGAGGGCCGGCGGGAGCGCGGGCTCCGTGACGCAGCGCCGGGCCCGGCACACATTCACCTGGGAGCAGGGGGCATGGCAATCGaggaaaaaggaaatgttttctgtGAGAAACCAAACTATTTCCACTGTTTTGACAGTGACTGTTTTACAACGTACACACAATTCCAGCGtgcctcttttttttgtttttgttttttttcttccttaagTGGCTGCCGTTTTAtggtccccccccccccccctattaACGTGGACTGCTGAATGGAGAGTGTGATACAGCGGGGTGGAGTTAACTTTTCATAGTCAGAAATGACCTATTCAGTGTTTTGGACTGTGAAGCTTTTGGTATGCAGTTATCTTTTTACAGTTCtgatgtggatttttttttttttttttaattaaatctgaaaactcctcccctttctctccccccatTCTGCCTAGTGCCTATAGCATTTTTATAGAGGACTACATAGGTGACAAAGGCAATCCCCCTACTtgatatttttgaaatgtaaaagtacGAGACCGCACCCCATTTCTAGAAATTGCACATCTCTGCAGCCTTTTATTGCTTGTACAGTTGTTGGTGAAGGAAAACCGCTCCAGACTGTATttactgaaatggaaaataaagagcAAACTTACCCCATGTGATTCCTTACCACACCATCCCTCTGATTCATCAAGCTTACATGTTTTTTGGAACAACAGAATGACATCTTGCAATTAATTCAAGCCGTGTTGCATAACACTGGAACCCCGtctattaaaatgattttataatgTTCTAATGCTCTTGTTTCG

Function

symbol description
eif5b Predicted to enable translation initiation factor activity. Predicted to act upstream of or within translational initiation. Orthologous to human EIF5B (eukaryotic translation initiation factor 5B).

NR:

description
PREDICTED: eukaryotic translation initiation factor 5B

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03243 EIF5B; translation initiation factor 5B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014748 True 4456 mRNA 0.53 24 29615521 29643703

Neighbor

gene id symbol gene type direction distance location
AMCG00014744 NA coding downstream 108460 29490065 ~ 29507061 (-)
AMCG00014742 sik1,LOC105911651 coding downstream 151645 29454042 ~ 29463876 (-)
AMCG00014735 NA coding downstream 232073 29351748 ~ 29383448 (-)
AMCG00014732 NA coding downstream 583613 29023778 ~ 29031908 (-)
AMCG00014731 NA coding downstream 602466 28995936 ~ 29013055 (-)
AMCG00014750 NA coding upstream 6735 29650438 ~ 29651309 (-)
AMCG00014749 NA coding upstream 14570 29658273 ~ 29659385 (-)
AMCG00014756 unc50,LOC107672653 coding upstream 191548 29835251 ~ 29841157 (-)
AMCG00014755 NA coding upstream 199721 29843424 ~ 29852958 (-)
AMCG00014759 NA coding upstream 271552 29915255 ~ 29940883 (-)
G72535 NA non-coding downstream 53455 29560538 ~ 29562066 (-)
G72495 NA non-coding downstream 192149 29421260 ~ 29423372 (-)
G72472 NA non-coding downstream 263867 29350078 ~ 29351654 (-)
G72438 NA non-coding downstream 397488 29217780 ~ 29218033 (-)
G72423 NA non-coding downstream 426477 29188690 ~ 29189044 (-)
G72530 txndc9,LOC107568936,LOC107668903,LOC106586783 non-coding upstream 3885 29647588 ~ 29649642 (-)
G72581 NA non-coding upstream 95504 29739207 ~ 29743212 (-)
G72629 NA non-coding upstream 303014 29946717 ~ 29947061 (-)
G72642 NA non-coding upstream 324952 29968655 ~ 29982575 (-)
G72646 NA non-coding upstream 410637 30054340 ~ 30055173 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 217216 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 1283039 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 2245994 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 2310924 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 7370606 22225924 ~ 22244915 (-)
AMCG00014775 NA other upstream 1197820 30841523 ~ 30846800 (-)
G73047 NA other upstream 2619464 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 2811603 32455306 ~ 32555945 (-)
G73127 NA other upstream 2953759 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 3151302 32795005 ~ 32806295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G231214 NA non-coding NC_053135.1 CM020932.1 13421 ~ 15306 (+)