AMCG00014756 (unc50,LOC107672653)


Basic Information

Item Value
gene id AMCG00014756
gene name unc50,LOC107672653
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29835251 ~ 29841157 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014756
ATGTTACCCACCACGACGTACTCCCCTCAGAGCCAGGGAAATGGCAGCCTGAGCTCGCGAGATGCCGCGCGCCACACGGCAGGAGCCAAGCGCTACAAGTACCTGCGGCGAGTCTTCCACTTCAAGCAGATGGACTTCGAGTTCGCTGTCTGGCAGATGCTGTACCTGTTCACCTCCCCACAGAAAGTCTACCGCAACTTTCACTACAGGAAACAGACGAAAGACCAGTGGGCAAGGGACGACCCTGCTTTCCTTGTGATTCTCAGCATCTGGCTGTGTGGGTTTGCCATTGTGCTGGGGATGGGTGTCTTGGAAATGATGAAGCTGCTATTATGGGTGGTCTTCATTGATTGCATTGGAGTCGGCCTACTGATATCAACATTAATGTGggtcatttcaaacaaatatctGATGAAGCATCCGAGCAAAGACTATGATGTGGAATGGGGTTATGCCTTTGACGTGCACCTCAACGCCTTCTACCCACTGCTGGTGATTCTGCACTTCTTCCAGCTGTTCTTCATTAACCacattgtttttataaactCCGAATGGTTCATTGGGTGCCTTGTGGGTAACACCCTGTGGCTGATTGCCATCGGCTATTACATCTACATCACCTTCTTGGGCTACAGTGCATTACCCTTCCTGAAGAACACAGTCATCCTGCTGTATCCCTTCGCGCTGCTGGTCTTGCTGTACCTGGTCTCTCTGGGCCTGGGCTGGAACTTCACCCGAGGCCTCTGCTTTTTCTATAAGTACCGGGTGCAGTAG

Function

symbol description
unc50 Predicted to enable RNA binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Orthologous to human UNC50 (unc-50 inner nuclear membrane RNA binding protein).

NR:

description
PREDICTED: protein unc-50 homolog

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014756 True 774 mRNA 0.51 5 29835251 29841157

Neighbor

gene id symbol gene type direction distance location
AMCG00014749 NA coding downstream 175866 29658273 ~ 29659385 (-)
AMCG00014750 NA coding downstream 183942 29650438 ~ 29651309 (-)
AMCG00014748 eif5b,LOC107567794 coding downstream 191548 29615521 ~ 29643703 (-)
AMCG00014744 NA coding downstream 328190 29490065 ~ 29507061 (-)
AMCG00014742 sik1,LOC105911651 coding downstream 371375 29454042 ~ 29463876 (-)
AMCG00014755 NA coding upstream 2267 29843424 ~ 29852958 (-)
AMCG00014759 NA coding upstream 74098 29915255 ~ 29940883 (-)
AMCG00014758 NA coding upstream 108874 29950031 ~ 29951305 (-)
AMCG00014762 rabl3,LOC107659889,LOC107595844 coding upstream 370981 30212138 ~ 30217061 (-)
AMCG00014763 NA coding upstream 779348 30620505 ~ 30627347 (-)
G72581 NA non-coding downstream 92039 29739207 ~ 29743212 (-)
G72530 txndc9,LOC107568936,LOC107668903,LOC106586783 non-coding downstream 185609 29647588 ~ 29649642 (-)
G72535 NA non-coding downstream 273185 29560538 ~ 29562066 (-)
G72495 NA non-coding downstream 411879 29421260 ~ 29423372 (-)
G72472 NA non-coding downstream 483597 29350078 ~ 29351654 (-)
G72629 NA non-coding upstream 105560 29946717 ~ 29947061 (-)
G72642 NA non-coding upstream 127498 29968655 ~ 29982575 (-)
G72646 NA non-coding upstream 213183 30054340 ~ 30055173 (-)
G72659 NA non-coding upstream 325560 30166717 ~ 30166926 (-)
G72680 NA non-coding upstream 369985 30211142 ~ 30211396 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 436946 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 1502769 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 2465724 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 2530654 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 7590336 22225924 ~ 22244915 (-)
AMCG00014775 NA other upstream 1000366 30841523 ~ 30846800 (-)
G73047 NA other upstream 2422010 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 2614149 32455306 ~ 32555945 (-)
G73127 NA other upstream 2756305 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 2953848 32795005 ~ 32806295 (-)

Expression


Co-expression Network