AMCG00014757 (LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352)


Basic Information

Item Value
gene id AMCG00014757
gene name LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29843467 ~ 29846586 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014757
ATGCCCAAGTATTACGAGGACAAAGAGGATGATGGCAGAGCTTGCTCGGGGGTGAGAGAGGACTTCAAGTCTTGTCTCCTTGAACACGATTGTGTACGAAAGGAAGGGAAGAGCCCAAGCGAATGCCTGAAGGAAGGACATTGCAAAGCTCTGCAGGTTTCTTTCTTCGAGTGTAAAAGATCGATGGTAAGCCAGCATTTCTCACTCTTTTTGCGGCAATCTGCCATTAGAGAGCGCTACTTTACTTATAATAGTGCGTGA
>TU90738
TTTTTACATGGCCGCGTCCATAACAATATTAGTAACGTTGTTGAAGTGGCGTATACTGTAAGGAGATAATTACGCGATAGGGAAAGGTCTATCGTTACAAGAGGCCACATTAGTTGAAAAGCAATGCCCAAGTATTACGAGGACAAAGAGGATGATGGCAGAGCTTGCTCGGGGGTGAGAGAGGACTTCAAGTCTTGTCTCCTTGAACACGATTGTGTACGAAAGGAAGGGAAGAGCCCAAGCGAATGCCTGAAGGAAGGACATTGCAAAGCTCTGCAGGTTTCTTTCTTCGAGTGTAAAAGATCGATGatAGATACAAGGTCACGATTCAGAGGCAGAAAAGGATATTGAAGCGAAGATCCAGTCATCTCTTGAAAACATGAGATGTGTGAGAGATCCCTGAAGGAACAAGGTTTAGGTGCAAATAAGAATAATTTTGGGATGTGGTTCCCCTTCATTGTTGCCCCATTAGAACTACACATTACTCCAACATGACTACTGTGTAAATGTGAATTGTGGCAATGTTggcaagctttttttttttttttgtcagataAGCATAAAAGATTTGTATGAATCTAGCATCTTCTAGTGCAATAATGAGATTCTTTGCTGGTGGAAAAAACAATACTAACCAACAGTTTTGGAAAAGTAAGTGGCAAACttatgaataaaatgtagtaACCTGTGTGAACTTGAGTGCCATTACAGCTCCATACCTGTGTATGGGCACCTCTAAACTGAAGAATCCTTGATATTTGCAAAACATGTCTTCTCTGGTTGTGTTAAAGACCCACGGCACTGAGCACAGTCCTGTCCTGTTAATCTGCTTTTTAAACAAGGAGGTTGTACCTCTTCAAcctcttgcattttattttttctttctgctacTCCATATGCAAATTCTAAAATTCTTTATGGACAAAGGTTTTTATAATTCCAAAAAATAAAGgtgaaaatgcattgttt

Function

NR:

description
cytochrome c oxidase assembly factor 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014757 False 261 mRNA 0.47 2 29843590 29844077
TU90738 True 969 lncRNA 0.39 3 29843467 29846586

Neighbor

gene id symbol gene type direction distance location
AMCG00014754 mgat4a coding upstream 13476 29787726 ~ 29829991 (+)
AMCG00014751 NA coding upstream 103824 29735891 ~ 29739643 (+)
AMCG00014752 NA coding upstream 109845 29708405 ~ 29733622 (+)
AMCG00014753 NA coding upstream 158808 29659544 ~ 29684659 (+)
AMCG00014747 NA coding upstream 186378 29653193 ~ 29657089 (+)
AMCG00014761 olig3 coding downstream 246826 30093412 ~ 30094212 (+)
AMCG00014760 NA coding downstream 253400 30099986 ~ 30142954 (+)
AMCG00014778 NA coding downstream 315392 30161978 ~ 30172006 (+)
AMCG00014773 NA coding downstream 328481 30175067 ~ 30182397 (+)
AMCG00014776 NA coding downstream 351177 30197763 ~ 30211831 (+)
G72426 NA non-coding upstream 651189 29191971 ~ 29192278 (+)
G72415 NA non-coding upstream 683042 29157025 ~ 29160425 (+)
G72409 NA non-coding upstream 706114 29137129 ~ 29137353 (+)
G72354 NA non-coding upstream 852168 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 857891 28981122 ~ 28985576 (+)
G72767 NA non-coding downstream 990250 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 994974 30841560 ~ 30844670 (+)
G72769 NA non-coding downstream 999576 30846162 ~ 30846421 (+)
G72783 NA non-coding downstream 1109319 30955905 ~ 30956284 (+)
G72789 NA non-coding downstream 1156786 31003372 ~ 31003788 (+)
AMCG00014738 NA other upstream 564318 29268329 ~ 29279149 (+)
AMCG00014739 NA other upstream 587113 29247875 ~ 29256354 (+)
AMCG00014729 NA other upstream 1005557 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 1539394 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1963667 27868703 ~ 27879800 (+)
G72605 NA other downstream 4864 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 917765 30764351 ~ 30812287 (+)
G72785 fam160a2 other downstream 1131630 30978216 ~ 30978825 (+)
G72786 NA other downstream 1132984 30979570 ~ 30980252 (+)
G72787 NA other downstream 1143477 30990063 ~ 30996363 (+)

Expression


Co-expression Network