AMCG00014760



Basic Information


Item Value
gene id AMCG00014760
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30099986 ~ 30142954 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00014760
ATGAAAAGCACCTCAAACAGCCAACTACCTAACCAGGATTTGAGAGGGACCTATGTGTGCGGGAACCAGGGTAACAGGGACCATCTCCAGGCTAACGCCAAAGCCACCAAGGAGCTGAGCCCTGAAGACCAGCAGGAGCTGAGGAAGAAGATCAACaacagggagaggaagaggatgcAGGACCTGAATGTGGCCATGGATGCCCTGCGTGAAGTGATGGTCCCTTATTCGGCGGCCCACCAGCACGGAGCCCCAGGAAGAAAACTCTCTAAGATCTCCACGCTCCTCCTGGCCAGGAACTACATCCTCCTGCTGAGCTCCTCTCTTCAGGAAATGAGGAGGCTGCTGGGGGAGATCAGTGGGCCCGCACCAAGGCTTCTGTTGGCAGGGTGGCCCCTGTTCACCACCCCTGGGTCCCTGTTCCTTACCCCCGACTCCATCATGGCCAGCAAGTGCACTCTGCTGTCCCCAGAGGAACACCCTTACCCCCAGCTGCAGTGGTCGAGCGGAGGACAAATCTGCTCTTGCGaGGCTCTCGGTTTCATTACGGGTGCTCACCATTACATGATCTGA

Function


GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00014760 True 573 mRNA 0.57 4 30099986 30142954

Neighbor


gene id symbol gene type direction distance location
AMCG00014761 olig3 coding upstream 5774 30093412 ~ 30094212 (+)
AMCG00014754 mgat4a coding upstream 269995 29787726 ~ 29829991 (+)
AMCG00014751 NA coding upstream 360343 29735891 ~ 29739643 (+)
AMCG00014752 NA coding upstream 366364 29708405 ~ 29733622 (+)
AMCG00014753 NA coding upstream 415327 29659544 ~ 29684659 (+)
AMCG00014778 NA coding downstream 19024 30161978 ~ 30172006 (+)
AMCG00014773 NA coding downstream 32113 30175067 ~ 30182397 (+)
AMCG00014776 NA coding downstream 54809 30197763 ~ 30211831 (+)
AMCG00014767 NA coding downstream 98752 30241706 ~ 30250266 (+)
AMCG00014769 stxbp5l coding downstream 383039 30525993 ~ 30531499 (+)
G72426 NA non-coding upstream 907708 29191971 ~ 29192278 (+)
G72415 NA non-coding upstream 939561 29157025 ~ 29160425 (+)
G72409 NA non-coding upstream 962633 29137129 ~ 29137353 (+)
G72354 NA non-coding upstream 1108687 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 1114410 28981122 ~ 28985576 (+)
G72767 NA non-coding downstream 693882 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 698606 30841560 ~ 30844670 (+)
G72769 NA non-coding downstream 703208 30846162 ~ 30846421 (+)
G72783 NA non-coding downstream 812951 30955905 ~ 30956284 (+)
G72789 NA non-coding downstream 860418 31003372 ~ 31003788 (+)
G72605 NA other upstream 248165 29851450 ~ 29851821 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other upstream 253400 29843467 ~ 29846586 (+)
AMCG00014738 NA other upstream 820837 29268329 ~ 29279149 (+)
AMCG00014739 NA other upstream 843632 29247875 ~ 29256354 (+)
AMCG00014729 NA other upstream 1262076 28797049 ~ 28837910 (+)
AMCG00014777 NA other downstream 621397 30764351 ~ 30812287 (+)
G72785 fam160a2 other downstream 835262 30978216 ~ 30978825 (+)
G72786 NA other downstream 836616 30979570 ~ 30980252 (+)
G72787 NA other downstream 847109 30990063 ~ 30996363 (+)
AMCG00014786 nhlh2,LOC106574539,LOC107739819,LOC105019883 other downstream 1000469 31143423 ~ 31147877 (+)

Expression



Co-expression Network