AMCG00014762 (rabl3,LOC107659889,LOC107595844)


Basic Information

Item Value
gene id AMCG00014762
gene name rabl3,LOC107659889,LOC107595844
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30212138 ~ 30217061 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014762
AAGTAACTAAAAATGGCCTCTCTTGACAGAGTGAAGGTGTTAGTTTTGGGAGATTCGGGTGTTGGCAAATCATCACTGGTTCACTTGTTGTGCCACAATCAAGCACTGGGTAACCCTTCTTGGACAGTGGGGTGTTCAGTGGATGTGCGGGTCCATGACTATAAAGAGGGAACTCCAGATGAGAAGACATACTACACTGAGTTGTGGGATGTAGGAGGATCAATAGGCAGTGCAAGCAGTGTAAAAAGCACCAGGGCTGTGTTTTACAACTTTGTCAATGgCATCATTCTAGTCCACGATTTGACAAACAAGAAGTCCTCACAGAATTTGTGTCGCTGGTCGATAGAAGCCTTGAATAAAGATCTGTCTCCAACAGGGGTTATAGTCACAAACGGtGACTATGACCGGGAGCAGTTTGCAGAAAATCAGGTTCCACTGCTGGTGATTGGGACCAAGTTTGACCAGATCCCAGAGAACAAGCGCAATGAGGTGTTAACAAGGACTGCTTTCCTTGCAGAGGATTTTAACGCAGAAGAAATAAATCTGGATTGTACTAATCCCAGGTATTTAGCTGCAGGTTCATCAAATGCTGTCAAGTTGAGCAGGTTTTTTGATAAGTCCACACCATTGCTGAGTCTTCTCCACAGCTGTCATCCAACACGAAGTAGAGTAAAGTGTCATCAAGGGAGAACCCAGATTCACCAGTAGAGACGCTAGCATTGATCCTTACCTGATTTCAGAGCATTGATACCCAACCCTGGTTTTGGTGAGATCTATAGGgtcttttggttttcattccaaccaaTACCACAACATGAATGATCCAATTATTGGCTTAAAGAGTCAAGATAAACATGATATTTAGCCACTGACTGAAGACACACAGACTCTGACAGATTGGTGCTCCCCTGGACCACAGTTGGAGATCACAGTGTAGCCAGATGCATTGACTGTCAAAATTATACAAATCCCTGCACCACAGCCCTGAGAAACCATTAGTTTGTGTATTCAAACACTACATTTCACAGTTATTGGGGGAATCTAGGGTTGCACTTTGCAGTCATTAGAGTCAGTAATGAACCGTTGTTACGCCCACTTTTCCACAGGTTAAACCTGAAGTGAACATGATTAACTCATTAAATGGCACAATAAGAAAGTTTGCcctgtgaaatgttttgaacTTTACCAAATAGCCTAcataatgtgtacatttgtgttcaGCATGAAGGATATGATTCAACTCTTCTATTTTTGTAGGTAATTGAAAAAAGATACTTCACAAGGGATGGAAATCAGCTGGGTGGTTTCTCAGACAGGAAGCGAAACTTCAAAACCCTTCACTATGACTGACTGTCACCCTTTACTGCCCCCACAAGGCTTGGAACTATAGAGACAATGAAGTTGTTTTGTGGTTGTGGAATCCAGCTGTTTCATCTGTACCATTGTGACAGTTTAATGGAAttttccattgtgtgtgtgtgtaaattgaGTGTAATAAGTAATGAGTCATGCCATCAGGGGTGGCAGGGAAGGTGGGTGAATGTCTTTACTTTTGATACTGTGGAATTAAGACTTAAAGGACCAgaaattgattttcattttgttttttaaggtgcTGTGTGATAAGAAATTAGCATATATTTGTAAGAGATAAAGGGTTACCTGTCTTCTTTCATATATTTGCTTTCCAGTTTGTGGAGTGGTACCTGAATTAACTTCTCTGGCAAACTAACAATACTAAACACCTCATATCTACTTTGACAAAAGCTGTCAATAAGTTATTATCAATGTGTTGGTAAAGCACAGGGACAAAAATGGGGAGTACAGGCCTTAACAAGCTCCTCGGGTTTGTCATCTTAATCAGTTGTTTGAAGTGATCTTGCAAATGTCAGTCAGttatttgttgttgcttttctgaTGCTCAAAGGATTGTTCTCCAAAACATGTCTCATTTGTAAAGATGAAAGGAAGTACATTTATAGATGATATATGTCTGCAAataattacaacattttttaaaccaaatgtaTAGCCAACCACATAACTTGCAGATATGTGCAACGTTTTGTTTCTGTACCTTTGTATCcaaaatgtgaataatttttaaacaataaatgttCTCTCAAAACATTTCATAGCTGGCCTGAGTAATAATCCCTCAGACCCTTATAATGGTTAAATGtggtgctttgttttctttcttttttccagcgcttttgtggttttactatgcattttcatttgtgtggCTAGGTGCTGTTGTCTTAATTGTGAGAGGCTTAACACAGCCATTCAAGGTATGGTAGTTAGATACTGTTCTCCAAAACTCCACTGTATAAGACTAGCTCTGTCTGTGACATCCAGG

Function

symbol description
rabl3 Predicted to enable GTP binding activity; GTPase activity; and protein homodimerization activity. Predicted to be involved in several processes, including lymphocyte differentiation; regulation of Ras protein signal transduction; and regulation of protein lipidation. Predicted to act upstream of or within proteolysis. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RABL3 (RAB, member of RAS oncogene family like 3).

NR:

description
PREDICTED: rab-like protein 3 isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07933 RABL3; Rab-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014762 True 2365 mRNA 0.40 8 30212138 30217061

Neighbor

gene id symbol gene type direction distance location
AMCG00014758 NA coding downstream 260833 29950031 ~ 29951305 (-)
AMCG00014759 NA coding downstream 271255 29915255 ~ 29940883 (-)
AMCG00014755 NA coding downstream 359180 29843424 ~ 29852958 (-)
AMCG00014756 unc50,LOC107672653 coding downstream 370981 29835251 ~ 29841157 (-)
AMCG00014749 NA coding downstream 552753 29658273 ~ 29659385 (-)
AMCG00014763 NA coding upstream 403444 30620505 ~ 30627347 (-)
AMCG00014764 NA coding upstream 413375 30630436 ~ 30646339 (-)
AMCG00014765 NA coding upstream 451465 30668526 ~ 30689037 (-)
AMCG00014766 NA coding upstream 471981 30689042 ~ 30695325 (-)
AMCG00014780 NA coding upstream 542096 30759157 ~ 30763061 (-)
G72680 NA non-coding downstream 742 30211142 ~ 30211396 (-)
G72659 NA non-coding downstream 45212 30166717 ~ 30166926 (-)
G72646 NA non-coding downstream 156965 30054340 ~ 30055173 (-)
G72642 NA non-coding downstream 229563 29968655 ~ 29982575 (-)
G72629 NA non-coding downstream 265077 29946717 ~ 29947061 (-)
G72685 NA non-coding upstream 44276 30261337 ~ 30261604 (-)
G72693 NA non-coding upstream 178078 30395139 ~ 30395338 (-)
G72790 NA non-coding upstream 729029 30946090 ~ 30947343 (-)
G72791 NA non-coding upstream 733049 30950110 ~ 30951375 (-)
G72862 NA non-coding upstream 1245118 31462179 ~ 31463783 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 813833 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 1879656 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 2842611 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 2907541 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 7967223 22225924 ~ 22244915 (-)
AMCG00014775 NA other upstream 624462 30841523 ~ 30846800 (-)
G73047 NA other upstream 2046106 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 2238245 32455306 ~ 32555945 (-)
G73127 NA other upstream 2380401 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 2577944 32795005 ~ 32806295 (-)

Expression


Co-expression Network