XLOC_006122 (iqcc)


Basic Information

Item Value
gene id XLOC_006122
gene name iqcc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33298338 ~ 33301986 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012060
GGGTGGCGGCAGTGAGCTGATATCGAGACTGATCTTCGGTGTATCTGTAAGGGAAGAAACGCACAAACAAACAGCGGCGCTATGAACGAACAGAAATGGATTCAGACGTTAACTCAGTTTCAGGCTCACTGTCGTGGTTGTGTGATGAGAAGAGGACTGAGTTTGGTTCAGGCTCAGTTTGAGGACATTGTGCAAGAAATTGATGGAGGATTGGATCACCTGCAGTGGAGAGGAAACATTATTCCCAGACCTCACTTCACTGACACGGAAAGCCTGCTGCTGCGGTATGAACGCTCTAGGATTCAGTGCCATGACCTTTTGGATCGCTCAGAGAAGGAACAGAATGAGGAATGTGAGAAATGTCTCCCACAGTCTGACATCCATGTACCAGAGAAAGACGAAGCTCCTGAAGCAGCCAGAAGTGAAACTTCCACACATGTGGATGATGTTGAGGATAAAAGAGGAGACATCATGGTCATTCAAAACCTGATGGATGATTGCTCTACACTTTGCAGTGATCTGAATTCTGATGTCAGACAGAGCAGTTTATTTCAGACAGcaGGACCAGGTTTGCATACACTTTTAAAAGACACAACACACACTCCTGAGTCTCTGAAGCAGCAGAGGAGCACTTTGGCCATGGAGCTGCTGTGGATTCAGCAAGCCATCAGTAGCAGAAAGAAATATCTCACTCTCAAACAGAGAATGGATGTGTCACACTGATTCTGGACCAGTTCAGAAGTGGACCAATATATTCAGGGATAATATTCTTATTAGTTACTCTGTAACACTCACAGCACTGAATGTTTCAgcaatgttgtaaataaatgtttatttatgagCTTGTTTTGTCCATGATAAATTTGAATAATCTTATAGAGGTGATatttcataaataaacacaaggtGCACTTGGATGGAGATTGTGTAAGATTACTGTTTATGTGTTACACAAAACCAATACAGTTTAGTTCTGGATAGCTCTCACAGACTGTTATTATACTCTCAACTAATATTTGCACTGTatagctttttttttacattttagatttaaatttttacaaattgtatttttatttttatttttttacataatattaaataatctgTATTTCCTTG
>TCONS_00012061
ACGCACAAACAAACAGCGGCGCTATGAACGAACAGAAATGGATTCAGACGTTAACTCAGTTTCAGGCTCACTGTCGTGGTTGTGTGATGAGAAGAGGACTGAGTTTGGTTCAGGCTCAGTTTGAGGACATTGTGCAAGAAATTGATGGAGGATTGGATCACCTGCAGTGGAGAGGAAACATTATTCCCAGACCTCACTTCACTGACACGGAAAGCCTGCTGCTGCGGTATGAACGCTCTAGGATTCAGTGCCATGACCTTTTGGATCGCTCAGAGAAGGAACAGAATGAGGAATGTGAGAAATGTCTCCCACAGTCTGACATCCATGTACCAGAGAAAGACGAAGCTCCTGAAGCAGCCAGAAGTGAAACTTCCACACATGTGGATGATGTTGAGGATAAAAGAGGAGACATCATGGTCATTCAAAACCTGATGGATGATTGCTCTACACTTTGCAGTGATCTGAATTCTGATGTCAGACAGAGCAGTTTATTTCAGACAGcaGGACCAGGTTTGCATACACTTTTAAAAGACACAACACACACTCCTGAGTCTCTGAAGCAGCAGAGGAGCACTTTGGCCATGGAGCTGCTGTGGATTCAGCAAGCCATCAGTAGCAGAAAGAAAGTGAGAAAAGTTGATATGCTCTTATCAATATTTGCTAATGTTTATCTAATATTAGATGTCCCATTTCACTTTCTACatcaaaataaatttacaaaatggAATGTGTATATATAACTGTATGAAATTTTACACCATAACTAtatcaaaactaaattttagaGTTGTAATATGTATAAGTAAAAACCTTGGACAACTTTAAAgtacttttttatt

Function

symbol description
iqcc Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IQCC (IQ motif containing C).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-325 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IQCC (IQ motif containing C).

Ensembl:

ensembl_id ENSDARG00000092483

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012060 False 1119 mRNA 0.40 5 33298338 33301986
TCONS_00012061 True 839 mRNA 0.41 4 33298396 33300914

Neighbor

gene id symbol gene type direction distance location
XLOC_006121 ccdc28b coding upstream 4684 33282095 ~ 33293654 (+)
XLOC_006120 tmem39b coding upstream 17028 33268657 ~ 33281310 (+)
XLOC_006119 oip5 coding upstream 38539 33256847 ~ 33259799 (+)
XLOC_006118 ndufaf1 coding upstream 46581 33246150 ~ 33251757 (+)
XLOC_006117 si:ch211-10a23.2 coding upstream 175098 33117528 ~ 33123240 (+)
XLOC_006123 dcdc2b coding downstream 2201 33304187 ~ 33314758 (+)
XLOC_006124 brf1a coding downstream 66154 33368140 ~ 33449639 (+)
XLOC_006125 ftr80 coding downstream 150110 33452096 ~ 33458790 (+)
XLOC_006126 ftr81 coding downstream 160246 33462232 ~ 33468697 (+)
XLOC_006127 jag2a coding downstream 186046 33488032 ~ 33551699 (+)
XLOC_006116 NA non-coding upstream 193110 33104911 ~ 33105228 (+)
XLOC_006113 BX470227.1 non-coding upstream 313569 32984654 ~ 32984769 (+)
XLOC_006112 NA non-coding upstream 381412 32906643 ~ 32916926 (+)
XLOC_006111 CR936241.1 non-coding upstream 451729 32846493 ~ 32846609 (+)
XLOC_006105 CR769766.1 non-coding upstream 905839 32392383 ~ 32392499 (+)
XLOC_006133 CR524481.1 non-coding downstream 1124262 34426248 ~ 34426365 (+)
XLOC_006135 NA non-coding downstream 1450188 34752174 ~ 34984913 (+)
XLOC_006136 CR376850.1 non-coding downstream 1581260 34883246 ~ 34883370 (+)
XLOC_006137 CR376850.2 non-coding downstream 1667533 34969519 ~ 34969645 (+)
XLOC_006140 CU681845.1 non-coding downstream 2181632 35483618 ~ 35522176 (+)

Expression


Co-expression Network