AMCG00014786 (nhlh2,LOC106574539,LOC107739819,LOC105019883)


Basic Information

Item Value
gene id AMCG00014786
gene name nhlh2,LOC106574539,LOC107739819,LOC105019883
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31143423 ~ 31147877 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014786
atgatgcTGAGCCCTGACCAACCCGACTCTGATCACCCTTGGGCTCAGTCGGACGCGGAATCGGTCCTCAACGACATGAAAGTCGGCTGCGTTTCGGACGAGCCGGGCGACGGGGACGGAAAGACCCGAGCCCTGGCTCCCCAGACCCTCAGCCGGGAGGAGAAGCGCAGGAGGCGGCGAGCGACCGCCAAGTACCGCTCGGCCCACGCCACACGGGAGAGGATCCGGGTGGAGGCTTTCAACGTGGCTTTCGCAGAGCTGAGAAAGTTACTGCCCACCCTGCCCCCTGACAAGAAGCTGTCCAAGATTGAAATCCTAAGGTTGGCCATCTGCTACATCTCTTATCTCAACCATGTGCTGGACGTTTAG
>TU90976
TCTATTGGTGccgagagagaggggtggggggaaaagaggggtgggagagagaaacaatacGATTCAACCAAATTATTCCGCTGCTCCGTCACTCCAGCCTCGCTTTATTAGGGGCATCATTTTAATCTTATCTCTTATACCATCTGCAAACTCAGCTCGACAGCACAAGAGGAGGATTTTTTCTCCCTCGTCCCCATCCCCGAGTTGCTTCTATAggagtgttgtgtttttttttcagcagagagaagaagaagagatcTCACTTTCCCCTAGACCTTTATCAGCAAAGCCATCTCTATTGTTTGGGGTCACAAGACGACAGCCACCACTTTGGCAAGATTTTATCTTCAAACAAAAcccaacaacaaccaaaaaaaaaaagtcaaccgCAGCTTTCCGATTAAAGGAGAAATCTCAATATGATTTAACAATACCAATAATTACTAAGCACATGCAATTCAGACTAATTGACAACAATACACAGatcataaaaacaacagcagtttGTGCTTCTGTTAAAGCAATACTACCGTTTTAGGCCTTCTTAAattgaatataataattttacagaGACTGGAGAATGGCGATGTCAAGGACTGGATAACATGTGCTATTGTAACAGAACCCCCAAAAAACCCTTGTGTTGGTTTTGATCGCTGCTGGGAATACCCTTACAGAGAAACGTCAAGGATCTACAgttaataaactttaaaaaaagactttaaCAAGatttccCTTTTTCATCCTAACCCGaagacaaatcaataaatacatcaaaactgaaaatgatgcTGAGCCCTGACCAACCCGACTCTGATCACCCTTGGGCTCAGTCGGACGCGGAATCGGTCCTCAACGACATGAAAGTCGGCTGCGTTTCGGACGAGCCGGGCGACGGGGACGGAAAGACCCGAGCCCTGGCTCCCCAGACCCTCAGCCGGGAGGAGAAGCGCAGGAGGCGGCGAGCGACCGCCAAGTACCGCTCGGCCCACGCCACACGGGAGAGGATCCGGGTGGAGGCTTTCAACGTGGCTTTCGCAGAGCTGAGAAAGTTACTGCCCACCCTGCCCCCTGACAAGAAGCTGTCCAAGATTGAAATCCTAAGGTTGGCCATCTGCTACATCTCTTATCTCAACCATGTGCTGGACGTTTAGAGCTGGAGCGAATTCAAGTTTTCCTTTAAAGAGCTGAATGCGGAGAATGAAgatagtggggggggggagaaatcaaaaacacttatttgcatacaaaaaaaatacaagcagGATAAGGTTGGGAAAGCACTGAAAGAGAAACACCAATCTCTGGCctttgctgctgttttaatagaagtgtttttatttggcaAAGCAGTAGAGGGGTTTGCAACCAAATGGGGAGTAAATCTTGCTACTGTTATCGACTCTCACCCTAAATTCTCCACTACTGACAGATGCAGGTGTAACATCCCggtgctggaaaaaaaaaaaactaaaaatgaacgctgtaatttgttgttgtaaagtctgtcatttaaaatagcaAAAACAAGAATGCAATAATTGAGCAGGGGTTGCAAAAAGTGATCTGTGTAGGCAGGTTTGGGGATACATTCTTGGAAGCGTTCAAATTCATCTCcaaatattttgtaaagtttttaaCCTTGGCTACGAGCTGCCTATGTGGCATGGTTGATTAAAAAGCAACCAAGAGGAaggagaaaaggggaaaaaaaacatagctgCTTCAAATAGTGTGTGCTGATTTCCAtgtaaaaggggaaaaaactgaaaatatttaagATAAGTGCCACTTCTTTTACGAAACATAAAATTGTGaccttaatatttatttattgattgattgattgatttgtttgtttatttaggctatagatttatattttttttcttatttttttactatgtGTGTCGTTATTTTTATGGTctgttgtttacattttaaatgtgtatgtgtacttATCTCTATTTTAGCCTGTGTTTTTGGAGTACAAAAGTGATATTTTTGCTCTTCTATTGCACTTGTCAGTGGTTTTCtgttaaaaagtattttgtaaattgaattgtatgtcatttatgttttaatttattttattttgtttgtttgtttctgcctATGGCAACAATAAGCACTTCACTTTGGGTAGATCCCTTAGATAACTTGTTGATATCCACGTCGTTTGAAACATGTAGATTTCTGAAAACGTTTTAAGGGGATGGTTGCTTGGAATTTAATGAAACTCATTAAAGTCATTAATCCAAAAATCgcaataaacataaaataacgtGTCTGttgtttaaacacaaataaaggcTGGTTAAAATgagtctatttaaaaaaagaaaacaccaaaaCAGCGTTATTTTGCCCCTGGTACAGTTTTATCACAATCTGCACACCATACGGTCTTGTACACTTTTGAATACAATGGTTAAATTCCAGGTTGCCTTTCCTTTGCTGCGACCAAAAATAGGATTATTtcgattatttatttatttatttatttatttatttatttatgtgtgtttgttaatttatgattgtttgtttgttattttgtgtaattgtttcTGCTGTGAACCtcttaaaacaataactgaTTTTTatagtgaaaaaatacatatctgcTATCCAAAGATTTTTGTCTTTTCAGGGTTTTTATCGTGTCTTCGTTGCTTTATAGCACATATTTTGTAGTGAAGTAGCTATAATAAGCTGGTTTCTAATGAACACAGTTTTTCATATCTTAATGGTGagctgttttgaaataaatatataaaattgattggtctgttttgtgtttaattttcaatCGCTTTAATTAGATTTATAGTAACAAATACTATATTCTACTTATTCcagctatacatttaaaacaaaaaaacaattaaaac

Function

symbol description
nhlh2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to several human genes including NHLH2 (nescient helix-loop-helix 2).

NR:

description
PREDICTED: helix-loop-helix protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014786 False 369 mRNA 0.61 1 31145769 31146137
TU90976 True 2894 lncRNA 0.37 2 31143423 31147877

Neighbor

gene id symbol gene type direction distance location
AMCG00014783 NA coding upstream 98682 31041891 ~ 31044741 (+)
AMCG00014784 NA coding upstream 116421 31023543 ~ 31027002 (+)
AMCG00014781 NA coding upstream 225857 30907169 ~ 30917566 (+)
AMCG00014771 NA coding upstream 292281 30847172 ~ 30851142 (+)
AMCG00014768 NA coding upstream 402279 30728363 ~ 30741144 (+)
AMCG00014787 vangl1,LOC106574540 coding downstream 93424 31241301 ~ 31264255 (+)
AMCG00014788 poglut1 coding downstream 149873 31297750 ~ 31308262 (+)
AMCG00014792 NA coding downstream 165096 31312973 ~ 31330675 (+)
AMCG00014800 NA coding downstream 533654 31681531 ~ 31696173 (+)
AMCG00014801 NA coding downstream 559371 31707248 ~ 31709519 (+)
G72789 NA non-coding upstream 139635 31003372 ~ 31003788 (+)
G72783 NA non-coding upstream 187139 30955905 ~ 30956284 (+)
G72769 NA non-coding upstream 297002 30846162 ~ 30846421 (+)
G72768 NA non-coding upstream 298753 30841560 ~ 30844670 (+)
G72767 NA non-coding upstream 306254 30836836 ~ 30837169 (+)
G72815 LOC103352915,LOC107742653,LOC105893249,LOC107739823,LOC107667646,LOC107552369,LOC107700101,LOC108434690 non-coding downstream 130210 31278087 ~ 31287434 (+)
G72861 NA non-coding downstream 314269 31462146 ~ 31463811 (+)
G72875 LOC103376870 non-coding downstream 376438 31524315 ~ 31592105 (+)
G72911 NA non-coding downstream 554285 31702162 ~ 31702435 (+)
G72912 NA non-coding downstream 555269 31703146 ~ 31703573 (+)
G72787 NA other upstream 147060 30990063 ~ 30996363 (+)
G72786 NA other upstream 163171 30979570 ~ 30980252 (+)
G72785 fam160a2 other upstream 164598 30978216 ~ 30978825 (+)
AMCG00014777 NA other upstream 331136 30764351 ~ 30812287 (+)
G72605 NA other upstream 1291602 29851450 ~ 29851821 (+)
AMCG00014793 NA other downstream 364931 31512808 ~ 31523187 (+)
G72925 NA other downstream 569241 31717118 ~ 31754930 (+)
AMCG00014799 NA other downstream 643024 31790901 ~ 31798463 (+)
AMCG00014811 NA other downstream 791676 31939553 ~ 31962971 (+)
G73103 NA other downstream 1394633 32542510 ~ 32561489 (+)

Expression


Co-expression Network