AMCG00014787 (vangl1,LOC106574540)


Basic Information

Item Value
gene id AMCG00014787
gene name vangl1,LOC106574540
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31241301 ~ 31264255 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014787
GATGACAACTGGGGAGAGACTACGACGGCCGTCACAGGGACCTCAGAGCATAGCATCTCCCAGGAGGACATTGTGCGGATCACCAAGGACATGGAGGATAGCGTGGGACTGGACTGCAAACGCTACCTGGGCCTGACGGTGGCAGCCGTGCTGGGCCTGCTGGTCTTCCTGACACCCATAGCCTTCCTCATCCTGCCCCACGTGCTTTGGCCTGACAAACTCAAGTCCTGTGGCACAGCCTGCGAGGGTCTCTTCATCTCGGTGGCCTTCAAGCTCCTGATCCTGCTGCTGGGGGCCTGGGCTCTGTTCTTCCGCACCCCCCGGGCCGATATGCCCCGTGTCTTCGTCTTCCGGGCCCTCCTCCTGGTCCTTGTCCTCCTCTTCGTCGTCTCCTACTGGCTCTTCTACGGCGTGCGCATCTTGGACTCCCAGGATGAGAACTACCAGGGCATTGTGCAGTATGCCGTCTCACTGGTGGACGCCCTGCTCTTCATCCACTACCTGGCCATAGTCTTGCTGGAGCTCCGGCAACTGCAGCCCACCTTCTCCCTCAAGGTGATCCGCAGCACTGATGGAGAGGCAGGCTTCTACAACCTGGGCCATTTAAGTATCCAGCGAGCAGCTCTGGTCATCCTGGAGAATTACTACAGAGATTTCCCTGTGCACAACCCTGCTCTTCTAACCGCGGCCAAATCAAGAGCTGCCAAGCACATGGCCGGTCTGAAAGTCTACAATGTGGATGGTCCAGGGAACAATGCCACCAGCCAGTCGAGGGCCATGATCGCGGCTGCAGCCCGGAGACGGGACTCCAGTCACAACGAGCTGTACTACGAGGAGGCAGACCATGATAGACGCGTGAGGAAGCGTAAAGCCAGGCTGGTGGTGGCTGTCGAAGAGGCCTTCACCCACATCAAGCGCATGCAAGAGGAGGATCAGAAGAAAGCCCCCGGGGAAGTGATGGATCCCCGAGAGGCCGCTCAAGCCATCTTCCCCTCCATGGCCCGAGCACTGCAGAAGTACCTCCGCACCACGAGGCAGCAGCACTGCCACAGCATGGAGAGCATCCAGCAGCACCTGGCCTTCTGTATCACCAACAACATGACACCAAAGGCTTTCTTGGAGAGCTACCTGAACCCTGGCCCGACACTGCAGTACAACAAAGATCGCTGGTTGGCGCGCCATTGGACTCTGGTGAGTGAGGAAGCAGTGACCAGCGGCCTAAAGGACGGGAGCATCTTCGTCCTGAAGTGCGTAGACTTTAGCCTGGTGGTGACCACCAGGAAGATCCCCTTCATCAAACTCTCTGAGGAATTCATCGACCCCAAGTCACACAAGTTTGTGCTTCGGTTACAATCTGAGACGTCGGTTTAG

Function

symbol description
vangl1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in primary posterior lateral line primordium. Human ortholog(s) of this gene implicated in caudal regression syndrome and neural tube defect. Orthologous to human VANGL1 (VANGL planar cell polarity protein 1).

NR:

description
PREDICTED: vang-like protein 1 isoform X2

GO: NA

KEGG:

id description
K04510 VANGL; vang-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014787 True 1371 mRNA 0.58 5 31241301 31264255

Neighbor

gene id symbol gene type direction distance location
AMCG00014783 NA coding upstream 196560 31041891 ~ 31044741 (+)
AMCG00014784 NA coding upstream 214299 31023543 ~ 31027002 (+)
AMCG00014781 NA coding upstream 323735 30907169 ~ 30917566 (+)
AMCG00014771 NA coding upstream 390159 30847172 ~ 30851142 (+)
AMCG00014768 NA coding upstream 500157 30728363 ~ 30741144 (+)
AMCG00014788 poglut1 coding downstream 33495 31297750 ~ 31308262 (+)
AMCG00014792 NA coding downstream 48718 31312973 ~ 31330675 (+)
AMCG00014800 NA coding downstream 417276 31681531 ~ 31696173 (+)
AMCG00014801 NA coding downstream 442993 31707248 ~ 31709519 (+)
AMCG00014798 NA coding downstream 463031 31727286 ~ 31741350 (+)
G72789 NA non-coding upstream 237513 31003372 ~ 31003788 (+)
G72783 NA non-coding upstream 285017 30955905 ~ 30956284 (+)
G72769 NA non-coding upstream 394880 30846162 ~ 30846421 (+)
G72768 NA non-coding upstream 396631 30841560 ~ 30844670 (+)
G72767 NA non-coding upstream 404132 30836836 ~ 30837169 (+)
G72815 LOC103352915,LOC107742653,LOC105893249,LOC107739823,LOC107667646,LOC107552369,LOC107700101,LOC108434690 non-coding downstream 13832 31278087 ~ 31287434 (+)
G72861 NA non-coding downstream 197891 31462146 ~ 31463811 (+)
G72875 LOC103376870 non-coding downstream 260060 31524315 ~ 31592105 (+)
G72911 NA non-coding downstream 437907 31702162 ~ 31702435 (+)
G72912 NA non-coding downstream 438891 31703146 ~ 31703573 (+)
AMCG00014786 nhlh2,LOC106574539,LOC107739819,LOC105019883 other upstream 93424 31143423 ~ 31147877 (+)
G72787 NA other upstream 244938 30990063 ~ 30996363 (+)
G72786 NA other upstream 261049 30979570 ~ 30980252 (+)
G72785 fam160a2 other upstream 262476 30978216 ~ 30978825 (+)
AMCG00014777 NA other upstream 429014 30764351 ~ 30812287 (+)
AMCG00014793 NA other downstream 248553 31512808 ~ 31523187 (+)
G72925 NA other downstream 452863 31717118 ~ 31754930 (+)
AMCG00014799 NA other downstream 526646 31790901 ~ 31798463 (+)
AMCG00014811 NA other downstream 675298 31939553 ~ 31962971 (+)
G73103 NA other downstream 1278255 32542510 ~ 32561489 (+)

Expression


Co-expression Network