AMCG00014795 (LOC107746280)


Basic Information

Item Value
gene id AMCG00014795
gene name LOC107746280
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31594391 ~ 31620377 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014795
GGCCTGGATGCCTGGGTCATCACTGTGGAGGAGCGAGCGAAACACGACCAGCAGTTCCACAGCTTAAAACCCACGGCAGGGTTCATCACTGGTGATCAGGCAAGGAATTTCTTTCTCCAGTCTGGGTTGCCCCCTCCCATTCTTGCACAAATATGGGCGCTGGCTGACCTGAACAATGATGGCAAGATGGACATACACGAGTTCTCCATCGCCATGAAGCTGATCAAACTGAAGCTCCAGGGccatcctcttcctccctcactTCCTCCTGTGATGAAACAGCCCCCCCTCGCTGTCCCCACCGCCTCTCTGTTTGGTATAGGGGGCATGGCTGCTATGCCAGGTATCCCTGGAGTGGCCCCAGTGCCAATGGCCCCACTGCCAGGAGTGGGAATGTCCCCTCCTCTGCATTTGCTTTACCGCGTTTACCTAAACCTGTCTgaattattcttttttctttcccacacGCAAACAGCTGCATCACTTAACAAAACTGCTTCCTTCAGCCGTTCCAGTACAAAACTACAAAAGGCACAGTCCTTCGATGTTCCAACTGCCCCAGCTGCCCCTGCACTCTCTGAATGGGCAGTCCCTCAGTCTTCACGGCTGAAGTACCGGCAGCTCTTCAACAGCCATGACAAAATGATGAGTGGGCACCTAACAGGGCCACAGGCAAGAACCATCCTCATGCAGTCTAGTTTACCACAAGCTCAATTAGCATCTATATGGAACCTCTCGGATATCGACCAGGACGGCAAGCTGACTGCAGAGGAGTTCATCCTAGCCATGCATTTGATAGACATGGCTATGTCAGGCCAGCCCCTGCCTCCCGTTCTCCCTCCAGACTTCATCCCCCCTGCTTTCAGAAGAGTTCGCTCTGGAAGTGGCATCTCCACCACCAGTCTACATTTGGTGGACCAGAGGGTCCAGGAGGAGCCTGTTGAGGAGGAGCTGCCCCCAGAAAAGAAGCTTCCAGTGACGTTCGAGGACAAGAAACGGGAGAACTTTGAACGGGGAAACCTGGAGTTGGAGAAACGGCGGCAGGCCCTTCTGGAGCAGCAGCGCAAGGAGCAGGAGCGCCTGGCAACCCTGGAGCGGCAGGAGCAGGAGCGGCGTGAGCGCGAGCGGCTGGAGCAGGAGCGGCGGCGGCAGCTGGAACTGGAGAAGCAGCTGGAGAAGcagagggagctggagaggCAGCGCGAGGAGGAGCGCAGGAAAGAGATCGAGAGGAGAGAGGCAGCCAAAAGGGAGCTTGAGAGGCAGCGGCAACTTGAGTGGGAGAGGAACCGGCGCCAAGAGCTGCTCAACCAGAGGAACAAGGAGCAGGAGAACATAGTGGTCTTAAAGGCCAGGAAGAAGACGCTGGAGTTTGAACTGGAGGCTCTCGTAGGTTTCCGCCGTTCCTGTGAGGCCTTGCCCCAAACTAATGACAAGAAGCACCAGCTGGAAGGGAAGCTGCAGGACCTGCGGTTCCGCCTGTCGGCCCAGCGGCACGAGATCGAGACCACGAACAAGACGCGCGAGCTTCGGATCGCTGAAATCACGCACCTCCAGCAACAGCTCCAGGAATCGCAGCAAATGCTTGGGAGACTGATACCTGAGAAGCAGTCCCTCAATGACCACTTAAAACAGGTGCAGCAAAACAGTTTGCATAGAGATTCCCTCCTAACCCTCAGAAAGGCTTTAGAAGTGAAGGAGAGCACACGACAACAGCTGCGAGATCAGCTGGATATAGTGGAGAAGGAGACCCGGTCCAAACTGCTGGAGATAGACGCCTTCAATAATCAGCTGAAG

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: intersectin-1-like

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20045 ITSN; intersectin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014795 True 1797 mRNA 0.56 14 31594391 31620377

Neighbor

gene id symbol gene type direction distance location
AMCG00014794 NA coding downstream 15803 31528997 ~ 31578588 (-)
AMCG00014796 NA coding downstream 122769 31469559 ~ 31471622 (-)
AMCG00014789 NA coding downstream 248961 31337113 ~ 31345430 (-)
AMCG00014790 casq1,LOC107742653,LOC107739823,LOC106575318,LOC107552369 coding downstream 301656 31279314 ~ 31292735 (-)
AMCG00014791 LOC106574540 coding downstream 315261 31261716 ~ 31279130 (-)
AMCG00014797 NA coding upstream 80250 31700627 ~ 31707522 (-)
AMCG00014806 NA coding upstream 149196 31769573 ~ 31789737 (-)
AMCG00014809 NA coding upstream 347067 31967444 ~ 31969223 (-)
AMCG00014813 NA coding upstream 650308 32270685 ~ 32285936 (-)
AMCG00014814 NA coding upstream 701597 32321974 ~ 32322759 (-)
G72874 NA non-coding downstream 74459 31515430 ~ 31519932 (-)
G72867 NA non-coding downstream 108925 31480848 ~ 31485466 (-)
G72868 NA non-coding downstream 127335 31466492 ~ 31467056 (-)
G72862 NA non-coding downstream 130608 31462179 ~ 31463783 (-)
G72791 NA non-coding downstream 643016 30950110 ~ 30951375 (-)
G72919 NA non-coding upstream 77278 31697655 ~ 31698012 (-)
G73005 NA non-coding upstream 276563 31896940 ~ 31898945 (-)
G73046 NA non-coding upstream 635778 32256155 ~ 32256775 (-)
G73049 NA non-coding upstream 644755 32265132 ~ 32265424 (-)
G73066 NA non-coding upstream 737325 32357702 ~ 32362393 (-)
AMCG00014775 NA other downstream 747591 30841523 ~ 30846800 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 2196086 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 3261909 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 4224864 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 4289794 27285420 ~ 27304597 (-)
G73047 NA other upstream 642790 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 834929 32455306 ~ 32555945 (-)
G73127 NA other upstream 977085 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 1174628 32795005 ~ 32806295 (-)
AMCG00014825 NA other upstream 1449872 33070249 ~ 33119328 (-)

Expression


Co-expression Network