AMCG00014836


Basic Information

Item Value
gene id AMCG00014836
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35390634 ~ 35412587 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014836
ACTGGAGAAGTTGTGGAAGAGACTGCATGCCAGGGGATTACAGAGAGAAAGTGTGACCTCACAAAGCTGTTGTCAGTTTTCGGTCAATACAATTTCAAAGTGAGAGCAGAGCAGGGGATTTTCACATCCCCGTGGGTGCAGAGTCCACGTTTCTCATTGGAATTGAACACAACTATCGGACCTCCCTCACAGGTGTCTGTAGATACTGCAAATGGTTTTTTGCATGTACAACTTCAGGATCCTGTGACtaactttaaaaacaagacTCTGGAAGATACTGAGACCACAGAAGAAGTAAACCAGCGAACATTTGCATTAACAAAACTGCAGTCCTGGACAAAGTACTGTGTTCAAGCTCAGGTGTTTATTAAAGCATACAACAAACGAGGAGAGTATAGCAAAGCAGTCTGTAAGACTACCACAACCAAtggtaaagcattttttttggCAGTCAGCTATAAATATTTGACAGATCCTCCACACTCCTATGTGTTCTTGGCCATGCAGAATCCAAATGAACCAGAGGAGATGTGCAACGAGATCAGCATTGTGTGTGAAGAGTCAGAGACCATTGAGATGGGAGAGAACACTCAGAAAAGTGGAGTGGTC
>TU91689
TCTTACAGTAAACATCCTGTGGAACTGTAGTCCTAACAAGAGACGTAATTAGCCACACTTTTGTCAAAATGGGGTcctttaaaatctgttttatcGAAAGCTGCTGTATATTGCAAGtGGTGCTTGCATCTTTACCTCCTCCAAGAAATGTAAGAGTGCATTCAATAAACCTTGGAGCCACACTACAATGGGACTATGAGGCTTCTGCAACCAATGTCACCTATACTGCAACATTCATATACAATATTTGACAGATCCTCCACACTCCTATGTGTTCTTGGCCATGCAGAATCCAAATGAACCAGAGGAGATGTGCAACGAGATCAGCATTGTGTGTGAAGAGTCAGAGACCATTGAGATGGGAGAGAACACTCAGAAAAGTGGAGTGGTCTCGGGTGAAGAGTTTCCTCAGGATCAGAAagaatgcatacaaatataatttgggTGATAAAGAACACAGCATTTTCTCATATTAATGGGACTTCAGGACCAATTCCCAGACTTATGCCAAATCTGGTTCGGCCACTGTGAAAGCATCTGTATAATTGAGCTAGTTTTTGACACAATATAAATAGATACTCTGACAAATGCTTCTATTATATTTATCCTGGCCTCAGTTGTTGGTGTTTGCTTTTGCTGTGTCATCAAGATGTGCTGTGCAACAGTTTCCAGCTTGTTTCCAAGGAGGATCTTCCATCAGACATGgattatattcatatttgcCAAAGGATGTTCTTTAGTCCTACCTACCTATGGATTCAGcatattctttaaaaagcaaCCTTTTCTCATGTGACATATTCAGTTTTGACGTGGAACTAGAAAATGGGAAATATCCCACCCCGCTACATCaacaatatatacactcacctaaaggattattaggaacacctgttcaatttctca
>TU91690
TCTTACAGTAAACATCCTGTGGAACTGTAGTCCTAACAAGAGACGTAATTAGCCACACTTTTGTCAAAATGGGGTcctttaaaatctgttttatcGAAAGCTGCTGTATATTGCAAGtGGTGCTTGCATCTTTACCTCCTCCAAGAAATGTAAGAGTGCATTCAATAAACCTTGGAGCCACACTACAATGGGACTATGAGGCTTCTGCAACCAATGTCACCTATACTGCAACATTCATATACAAAACTGGAGAAGTTGTGGAAGAGACTGCATGCCAGGGGATTACAGAGAGAAAGTGTGACCTCACAAAGCTGTTGTCAGTTTTCGGTCAATACAATTTCAAAGTGAGAGCAGAGCAGGGGATTTTCACATCCCCGTGGGTGCAGAGTCCACGTTTCTCATTGGAATTGAACAGTAACTATCTTTAACTATCCATTTGTAGGAAAGAAATTCAGTATTGTTGTAACATCCTGCAGTCACCTCTGAAAACAATATCTCAGGAACACTGTAATTGGAATTAGGGATGCACCGAAATGAACATTCTTGGCCGACAACAAAAGTCCATTAAAAAGTGGATGAACCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014836 False 609 mRNA 0.43 4 35394310 35412072
TU91689 True 906 lncRNA 0.40 3 35390634 35412587
TU91690 False 585 TUCP 0.41 3 35390634 35394649

Neighbor

gene id symbol gene type direction distance location
AMCG00014835 NA coding upstream 7731 35370984 ~ 35382903 (+)
AMCG00014833 NA coding upstream 69652 35027857 ~ 35320982 (+)
AMCG00014831 NA coding upstream 458774 34691085 ~ 34931860 (+)
AMCG00014827 NA coding upstream 1612386 33697523 ~ 33778248 (+)
AMCG00014822 NA coding upstream 2621655 32758965 ~ 32768979 (+)
AMCG00014834 NA coding downstream 51414 35464001 ~ 35474369 (+)
AMCG00014837 NA coding downstream 138570 35551157 ~ 35551807 (+)
AMCG00014848 tmprss3,LOC107748899 coding downstream 883129 36295716 ~ 36297723 (+)
AMCG00014850 NA coding downstream 1205078 36617665 ~ 36733253 (+)
AMCG00014852 NA coding downstream 1500813 36913400 ~ 36914503 (+)
G73380 NA non-coding upstream 122553 35267644 ~ 35268081 (+)
G73374 NA non-coding upstream 134519 35253869 ~ 35256115 (+)
G73356 NA non-coding upstream 221428 35168949 ~ 35169206 (+)
G73354 NA non-coding upstream 311738 35078659 ~ 35078896 (+)
G73327 LOC101154678 non-coding upstream 620676 34769583 ~ 34769958 (+)
G73427 NA non-coding downstream 59473 35472060 ~ 35476459 (+)
G73431 NA non-coding downstream 84610 35497197 ~ 35502434 (+)
G73462 NA non-coding downstream 259191 35671778 ~ 35672050 (+)
G73463 NA non-coding downstream 262386 35674973 ~ 35684158 (+)
G73471 NA non-coding downstream 327948 35740535 ~ 35742847 (+)
G73343 NA other upstream 430187 34942011 ~ 34960447 (+)
G73329 NA other upstream 610044 34780122 ~ 34780590 (+)
G73292 LOC100846954 other upstream 1151234 34238934 ~ 34239400 (+)
G73244 NA other upstream 2024534 33364755 ~ 33366100 (+)
G73103 NA other upstream 2829145 32542510 ~ 32561489 (+)
G73850 NA other downstream 2105521 37518108 ~ 37518406 (+)
G74114 NA other downstream 3019787 38432374 ~ 38432861 (+)
G74227 NA other downstream 3398106 38810693 ~ 38811128 (+)
G74348 NA other downstream 3923681 39336268 ~ 39475819 (+)
AMCG00014909 ankrd54 other downstream 4171451 39584038 ~ 39588507 (+)

Expression


Co-expression Network