AMCG00014839 (tmem50b,LOC101064157,LOC101067980)


Basic Information

Item Value
gene id AMCG00014839
gene name tmem50b,LOC101064157,LOC101067980
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35580626 ~ 35608677 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014839
tcttagTAATCTGCTCAAAGGGTGTGCAggacactgtaaataaaaaaaaataaaaaaacgtatttttaCCCTACTTTTGGACTCCGGACATCCCTGATATTTTTCCTTGGAGAACCTGTCGGCCCGTACTCACACAGTTCTTCACCGGCTGGTGGATAATGATTGATGCTGCAGTGGTCTATAACACCCAGGAGCAGTTGAATCATGCCTTCCACACATGTGGAGTCTTCTCAACCCTCGCCTTCTTCATGATAAATGCAGTGTCCAATGGGCAGGTTAGAGGAGACGGCTATGGAGAAGGTTGCTTTGGCAGAACAGGTGCAAGAATCTGGCTCTTCATTGGCTTTATGATGATGTTTGGGTCTCTTATTGCTTCTCTGTGGATTCTCTTTGGAGCATATGTTGTTCCTAGTTGTATATGCAAAATCAGAAGGGTACTTTACACATACCTGGCAAGAAAGTAGAGAAGGTCGACATTGAAAGGAATTCAGAAGGGGGAAAACATTACTTTGGACAAAACAGAGCTGATCTGGATTCTGAACAGGATGTCAGGATTGACAACTCCTTTCTTGAAAGTGTACAGGTTTACAGGATTGTTTTTCCAAAACTTTAGTTCTGTTAGTGGAAACAAATTACTGCATCGTACCCCTATTTTAGAAGATTATTAAACAAtgacctataaaacctgctgaTGTGTGATTCCTAAGATTACTAAAATGACTAGCCTATACAGTCTGTGTTTTAGGTGCAGAGAAAAAGGACAGTTGAACCAGGATTATTGAGCTATTCTTTTGAGGTGTAGACTTTTCAAATCCACAGGCTTTATcctaataaaagtaatattaaaatagttatgTATTTGAACCTGTTAACTGATAACAGATCTTATTGAATTTAAACATGCAATGTCCTTTTCATCTGCTGATCATAACAGCACTGCTGCAGTGAGTTGAATATCCTCTACACAAGATACCAACCCCAGGTGtatatcagattttttttaacagttgcCTTCTTTTGCAGAGAAGGAAGTGTATCCTGGccttgctgtgttttttcaaaatgcattgatATTTTTCAGcaCACTCATCTATAAGTTTGGGAGAACAGAAGACCTGTGGGCATAATCTCTCAGTCTTCCTCAATTTAATTAAGATACCATTTTCTTCAGTGATCTAACCTCAAACTTACTGAACCTTTGGTTTACAAAAGGTATTATGCCATGGCTTATCAAAACACAGCACAATTGAAAAAATCCCATGTATTCAGTGATATTCCCAggaatgtttaataaaaaatctaaaaaaaaataaaaactttgttaGCTgttataaacaacaataaacaaaccttGTTTATTAGCATTGTTTGtgaacaatgcatttaaaaaaagtcatgTGCAATGACATATTTCAACACAGGGTAAAATTCTGTTTTAGGcatacagtatattgttttttatattccttgagagtgtatgtgcatacacacacagatatatatgtaaaatcaGGGGTGGATCCAGGGGGTGCTCAGGGAGCTCGAGCCCACTGTAAATAACCACACCACTGCGAAGCGTAGCATGGGTTGTTCAAGTCGCTCACACAACCAGCTTTGCCATTCTTGAGTCCCCTTTAAATGAAAATCCTGTATCCACTCCTTAAaatctatatgtatgtgtgtgtgtatatgtataatatatccatataaatacataaatagatagatatatacttCCTTGGACAGATACCAAAATATGTTGCcagtcagattttttttttttttatgttactgtCCTACTGAAATACTGACACAAAGTACATTTGAAAGGGGGcggggtgtggg
>TU91914
GTCGATTGGTTAGTGACACAGTAAGTCATACCATGATTGGACAGAATGGCCATGTCAAGCATCGGCCCACCTACTCACTGATTTGGCTATTGGAACTTAAAGGAACAAGCTTGCAGTTCTTCACCGGCTGGTGGATAATGATTGATGCTGCAGTGGTCTATAACACCCAGGAGCAGTTGAATCATGCCTTCCACACATGTGGAGTCTTCTCAACCCTCGCCTTCTTCATGATAAATGCAGTGTCCAATGGGCAGGTTAGAGGAGACGGCTATGGAGAAGGTTGCTTTGGCAGAACAGGTGCAAGAATCTGGCTCTTCATTGGCTTTATGATGATGTTTGGGTCTCTTATTGCTTCTCTGTGGATTCTCTTTGGAGCATATGTTGTTCCTAAGAAGGAAGTGTATCCTGGccttgctgtgttttttcaaaatgcattgatATTTTTCAGcaCACTCATCTATAAGTTTGGGAGAACAGAAGACCTGTGGGCATAATCTCTCAGTCTTCCTCAATTTAATTAAGATACCATTTTCTTCAGTGATCTAACCTCAAACTTACTGAACCTTTGGTTTACAAAAGGTATTATGCCATGGCTTATCAAAACACAGCACAATTGAAAAAATCCCATGTATTCAGTGATATTCCCAggaatgtttaataaaaaatctaaaaaaaaataaaaactttgttaGCTgttataaacaacaataaacaaaccttGTTTATTAGCATTGTTTGtgaacaatgcatttaaaaaaagtcatgTGCAATGACATATTTCAACACAGGGTAAAATTCTGTTTTAGGcatacagtatattgttttttatattccttgagagtgtatgtgcatacacacacagatatatatgtaaaatcaGGGGTGGATCCAGGGGGTGCTCAGGGAGCTCGAGCCCACTGTAAATAACCACACCACTGCGAAGCGTAGCATGGGTTGTTCAAGTCGCTCACACAACCAGCTTTGCCATTCTTGAGTCCCCTTTAAATGAAAATCCTGTATCCACTCCTTAAaatctatatgtatgtgtgtgtgtatatgtataatatatccatataaatacataaatagatagatatatacttCCTTGGACAGATACCAAAATATGTTGCcagtcagattttttttttttttatgttactgtCCTACTGAAATACTGACACAAAGTACATTTGAAAGGGGGcggggtgtgggggtggggggttgaggAGGGGTTTTAGATGTCCAAGGGGTAAACTATTGAaatatgtgtctgtctgtgccatTGGCTATGTTGTGTTTAATATCTAAAGcattttatgtaattgaaaCAAATAACGATGGGAACTACTGACTATTTTCCCTTGATTAAGCCTATTCTTTGTTAAATTTAGAATTAGGTCCtagcttttatattttctccTGTCAATTGGAATAGTGCAGCAATCAAAAGAACCATTTTGAGTTCCCAATAACAATCTAGAATGTCAGCTAAAATTGGAAGCAATGACCACAGTACTATAGTACCACAGTACCTGTACAGTACCTGTGCTGCAAGCTACATCTGAGTCCATGATAGCCAATTTGTAGGCAAGAATATGTAATACCCAGAATGAATTTCTGAATACATCCAGAATGAAAGATCTGATTCTAGCTCATCTTTGCACTATGAATTGTTCtatgaaaaatagaaaacaaaatgtgaaatatctggtCCCTGTGTAATAAATTGATAACAGTCATGTTGTCTTGTAGTTTTACAAGTGTGGTAGCATTGCATTGAATTTGCTTCAATTAAAAATTGCATAGAATGAGATAAACCGgcatttatgattttattctCTGTGTAATGGCATTCTCAAAAGTAGCCAACTCATGACAATCTATACATAGGGTTGTACAAATTAATTACAGGGTGTTTGCAAATAATGACttattatttaagtaaacaaattaagttaattgagAATAGTAGTACAAAGTTTGGGGAATAGCCTCCTGTTTGTGTAAAAAACCTTCATATGAGTCAATTATGCTGTACAGATGCATGAAGTTTTTAgcacttttattatttgtctGCCAAGCaaatattactatatattttaaaatatgattgttcCTGTCACCTGTAGTTGCATTGTTTTAGCATCAACAAATAATGCAAGTATTGCCATGTTAGTTAGATTTTTAGcatagtattaaaaaatataaattccatTTATCTTGCTCTGTGGCACCACATGGTCCGGTGTAAATGCTGgtgctgtgaaataaaatggGTTTCTGATTGTGTGAAATACTTGT

Function

symbol description
tmem50b Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Located in endoplasmic reticulum.

NR:

description
PREDICTED: transmembrane protein 50B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014839 False 1845 mRNA 0.37 6 35581715 35592456
TU91914 True 2301 TUCP 0.36 6 35580626 35608677

Neighbor

gene id symbol gene type direction distance location
AMCG00014832 NA coding downstream 399987 35172869 ~ 35180639 (-)
AMCG00014830 arglu1,LOC106586866 coding downstream 620377 34942975 ~ 34960249 (-)
AMCG00014829 efnb2a coding downstream 648980 34910593 ~ 34931646 (-)
AMCG00014828 NA coding downstream 1015424 34564486 ~ 34565202 (-)
AMCG00014826 NA coding downstream 2146244 33127678 ~ 33434382 (-)
AMCG00014838 LOC106600244 coding upstream 26310 35634987 ~ 35688097 (-)
AMCG00014841 NA coding upstream 133857 35742534 ~ 35767390 (-)
AMCG00014842 trappc10,LOC107726887 coding upstream 183671 35792348 ~ 35814438 (-)
AMCG00014840 agpat3,LOC102793782 coding upstream 369529 35978206 ~ 35986568 (-)
AMCG00014843 NA coding upstream 453942 36062619 ~ 36073308 (-)
G73562 NA non-coding downstream 115961 35391184 ~ 35464665 (-)
G73548 NA non-coding downstream 157491 35340673 ~ 35423135 (-)
G73533 NA non-coding downstream 220249 35275736 ~ 35360377 (-)
G73385 NA non-coding downstream 305888 35273610 ~ 35274738 (-)
G73381 NA non-coding downstream 312509 35267752 ~ 35268117 (-)
G73606 NA non-coding upstream 447319 36055996 ~ 36057458 (-)
G73609 NA non-coding upstream 585371 36194048 ~ 36194250 (-)
G73667 NA non-coding upstream 865566 36474243 ~ 36475948 (-)
G73704 NA non-coding upstream 1037382 36646059 ~ 36652043 (-)
G73722 NA non-coding upstream 1080680 36689357 ~ 36730561 (-)
G73328 LOC101154678 other downstream 810647 34769583 ~ 34769979 (-)
AMCG00014825 NA other downstream 2461298 33070249 ~ 33119328 (-)
AMCG00014824 NA other downstream 2774331 32795005 ~ 32806295 (-)
G73127 NA other downstream 2961477 32597462 ~ 32619149 (-)
AMCG00014816 NA other downstream 3024681 32455306 ~ 32555945 (-)
G73604 pdxk,LOC106574311,LOC105019670,LOC108428208,LOC107676865 other upstream 492681 36101358 ~ 36182351 (-)
G73612 NA other upstream 645097 36253774 ~ 36254187 (-)
AMCG00014845 NA other upstream 764474 36373151 ~ 36393493 (-)
G73833 NA other upstream 1716343 37325020 ~ 37325307 (-)
G73916 NA other upstream 2170656 37779333 ~ 37783575 (-)

Expression


Co-expression Network