AMCG00014840 (agpat3,LOC102793782)


Basic Information

Item Value
gene id AMCG00014840
gene name agpat3,LOC102793782
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35978206 ~ 35986568 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014840
ATGATCATGGGTTTCATTGCGTACCTGAAGACTCAGTTTATTCTGCACCTGCTTATCAGCTTTGTATTTATAGTGAGCGGACTTATTATAAACTTCATCCAGCTATGCACTTTAGTCTTCTGGCCTATCAACAAACAACTGTACCGCAGAGTCAACTGTCGCCTCTCTTATTCCCTCTGGAGTCAGCTGGTGATGTTGCTAGAATGGTGGTCAGGCACAGAATGCACCCTGTTCACTGATAAGGCTACGGTGGACAAGTTTGGGAAGGAGCATGCCATCGTCATCCTAAATCACAACTTTGAAATCGATTTCTTGTGCGGCTGGACCATTTGTGAGCGGTTTGGTGTGCTTGGGAGCTCCAAAGTCCTTGCAAAGCAGGAGTTGTTGAAAGTTCCACTGATTGGGTGGACATGGTACTTCTTGGAAATTGTCTTCTGCAAGAGAAAATGGGAAGAGGACAGAGACAAAGTCATCAAGGgactacaaaacctctctgACTACCCTGAGTGCATGTGG

Function

symbol description
agpat3 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in central nervous system; digestive system; optic vesicle; pronephric duct; and visual system. Orthologous to human AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3).

NR:

description
PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014840 True 516 mRNA 0.46 3 35978206 35986568

Neighbor

gene id symbol gene type direction distance location
AMCG00014842 trappc10,LOC107726887 coding downstream 163768 35792348 ~ 35814438 (-)
AMCG00014841 NA coding downstream 210816 35742534 ~ 35767390 (-)
AMCG00014838 LOC106600244 coding downstream 290109 35634987 ~ 35688097 (-)
AMCG00014832 NA coding downstream 797567 35172869 ~ 35180639 (-)
AMCG00014830 arglu1,LOC106586866 coding downstream 1017957 34942975 ~ 34960249 (-)
AMCG00014843 NA coding upstream 76051 36062619 ~ 36073308 (-)
AMCG00014844 NA coding upstream 187277 36173845 ~ 36332481 (-)
AMCG00014847 NA coding upstream 477886 36464454 ~ 36526810 (-)
AMCG00014846 LOC107578620 coding upstream 553250 36539818 ~ 36570308 (-)
AMCG00014849 NA coding upstream 816664 36803232 ~ 36804839 (-)
G73568 LOC107575789 non-coding downstream 135215 35434969 ~ 35842991 (-)
G73562 NA non-coding downstream 513541 35391184 ~ 35464665 (-)
G73548 NA non-coding downstream 555071 35340673 ~ 35423135 (-)
G73533 NA non-coding downstream 617829 35275736 ~ 35360377 (-)
G73385 NA non-coding downstream 703468 35273610 ~ 35274738 (-)
G73606 NA non-coding upstream 69428 36055996 ~ 36057458 (-)
G73609 NA non-coding upstream 207480 36194048 ~ 36194250 (-)
G73667 NA non-coding upstream 487675 36474243 ~ 36475948 (-)
G73704 NA non-coding upstream 659491 36646059 ~ 36652043 (-)
G73722 NA non-coding upstream 702789 36689357 ~ 36730561 (-)
AMCG00014839 tmem50b,LOC101064157,LOC101067980 other downstream 369529 35580626 ~ 35608677 (-)
G73328 LOC101154678 other downstream 1208227 34769583 ~ 34769979 (-)
AMCG00014825 NA other downstream 2858878 33070249 ~ 33119328 (-)
AMCG00014824 NA other downstream 3171911 32795005 ~ 32806295 (-)
G73127 NA other downstream 3359057 32597462 ~ 32619149 (-)
G73604 pdxk,LOC106574311,LOC105019670,LOC108428208,LOC107676865 other upstream 114790 36101358 ~ 36182351 (-)
G73612 NA other upstream 267206 36253774 ~ 36254187 (-)
AMCG00014845 NA other upstream 386583 36373151 ~ 36393493 (-)
G73833 NA other upstream 1338452 37325020 ~ 37325307 (-)
G73916 NA other upstream 1792765 37779333 ~ 37783575 (-)

Expression


Co-expression Network