AMCG00014841


Basic Information

Item Value
gene id AMCG00014841
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35742534 ~ 35767390 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014841
GAACTCTCTCATACTGCTAtggaaatgtacaaaacaattgATCGGTTGCGGTCTGCAAGACTGGTGGGGAAAAGCCTGGCTGAGTTTTATATgAGGAAGGGTGATCCCCAGAAAGCAGACACCTTTCTGCAGGACTCACTGAAGACTTACCTGGCTGAGGGCTGGACCCTACCTGTCACTCACACTAGAAAACAGATAGCAGAGTGTCAGAAACAACTGGGGCAGACTGAGAATTACCTTCAGACAAGTTCACTTTTAGCCAGTGACACCAATCTCACTTACGAGGAGAGAAAGCACTTCTGCCAGGAGATCCTGAACTTTGCCAACCGGCAGTCTGACAATCAAGTTCAAAAAGTAGTCCTGGGAATGAGTTCTTTTGCCCAGCTGCAGCAGCTACTTTTCTCTCCAGCCTCAGCAGTGGTGCATGTGGGAGGCTTGCTAGCTCTAGAGCTGAGCCTGCACAGCAACATGCCAGTGCCTGTTCATTTAGAGCAACTGGCAGCTAATGTGTACTTCAGCATCGAGAGAAACAGTGTCCGCAAGACTGGAGACCTGCTGGGCAAGCAGCGAgttggcagcagcagcaatggTATCGTTCACTTCCAAGCAGAGTCAGTAATTGGCAGTCTGCCTCGCACCAGTCCTCCCACACTTGAACTGTATGAGATGCATGACCGGAGCCCCTCAGACAATGCATTAAACTCCTCTGGTGTGGTCTGCAAGAATGTCCATCTGCTGCTACGCCGGCAAGAGAGTGTCTCCTCCATCGAGACTCCTTCAGGTGTGGCCATTGAGGACAGTGCCCAGATCCTCAAGATCAACAATGTCTCACTAATGCCAGGCATGAATACAATTCAGTTTACTGCACTGAGTCAAGAACCTGGTACGTACACCCTACGGCAGCTGTGTGCCACAGTTGGCAAAGTGCAGTTTGTTCTTCCCCACATTTACCCCATTGTACAGTATGAGGTTTATTCCCAGGAGCCCCAACTCACAGTGGAGCCCCTGACAGGTATTCCTCAAAAGGTGAAGTTCACAATTGTCACAGGCCACTACACCATTAAGAAGGGGGATGCACTTCAGCTCAGCAATGCTGATGCTATGCCAATACTCCACTCCACTGGCTGTAATGCTACAATCCTGTCCAACACTGGAGagagagtgggagagaccAAGCTCTCCATCCAGTCTTCTGAGAAGGTTACCAGCATCACTCTGCCTCAGACACCTGCCTATCACATGATAGAATTTGAACTGGAGGTTATGTGCCACATCCCTTCAGTCCTCCCCAAGCCCAGCGACAGTGAGAGACTCACCAATGGGGAGGTTCACCGGAGAACCAAAAGCAAACACAAGACTGACAGCTGCATGGCCTACATTGATCAAAAGCTTATATACAGCAAGCAGTCAGTCTTCTGCTTGTGGGAGATGAAGTGGACCGATGTTCTGCCTTCCTGCCTTCATTGTGTATTCTCTGTAAGCTTCTCACCAGCAACTGAGGAAGAGTCCTCCTTCAAGCCATACTCATATGAATTTCAGCTGGAGAATGTCTCTGTGAGTAACTCCTGTGCGGAATATGCATGTAAACCAGTGGCTGTACAACTGGAAACTCGGAAACTGTGccttatttgtaaaacaataaatacgaAAAATCAACATTCTCACTCAACTCTGTATAATGTGAAAGCTCAGATCCTTCCAACCCCAGGAGTTGAGCACTGCCACACTGGATCTCTCTGCTCTCTCGAAGTGTCCATCACACGGCTTTCTGACCTGGTAGAGCTGGATCGAGATGAGGGACTAACTGAATCAGATGGTCTATGCACCAGCAAGCTCATGTATGAAGTTGTGGATAACAGCAGTAACTGGGCTGTGTGTGGAAAGAGCTCAGGGGTAATATCCATGCCTGTGGTAGCCAGTGCAACGCACAAAGTCCAGATGGAAGTTATGCCTCTCTTCGCTGGAAACTTGCCTTTTCCCAACATCAGGGTCCTCAAGTACCTCCCTCATCACTCTATGCTCACTATTCAGTCTGACACTGACAGCTGGATTGAGAACGACAGTCTGTCTATTGACAAGGCACTGGATGAACAAGCAGACAACAGTAGCATTCGGAGTCGCACCAGCACGCACTCGACGGGCAGTGAACATAAGGGCTTGCCCATCCCACGCCTCGAGCCCTTCAGCCCTTGCCAGATCTTCAACAGCAGCTCTGGCGAGCAGGTCCTGGTGGTACCCAGCAAGGATGACCATGTACTGGAGGTCAATGTAACATGA

Function

GO: NA

KEGG:

id description
K20307 TRAPPC10, TRS130; trafficking protein particle complex subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014841 True 2277 mRNA 0.50 11 35742534 35767390

Neighbor

gene id symbol gene type direction distance location
AMCG00014838 LOC106600244 coding downstream 54437 35634987 ~ 35688097 (-)
AMCG00014832 NA coding downstream 561895 35172869 ~ 35180639 (-)
AMCG00014830 arglu1,LOC106586866 coding downstream 782285 34942975 ~ 34960249 (-)
AMCG00014829 efnb2a coding downstream 810888 34910593 ~ 34931646 (-)
AMCG00014828 NA coding downstream 1177332 34564486 ~ 34565202 (-)
AMCG00014842 trappc10,LOC107726887 coding upstream 24958 35792348 ~ 35814438 (-)
AMCG00014840 agpat3,LOC102793782 coding upstream 210816 35978206 ~ 35986568 (-)
AMCG00014843 NA coding upstream 295229 36062619 ~ 36073308 (-)
AMCG00014844 NA coding upstream 406455 36173845 ~ 36332481 (-)
AMCG00014847 NA coding upstream 697064 36464454 ~ 36526810 (-)
G73562 NA non-coding downstream 277869 35391184 ~ 35464665 (-)
G73548 NA non-coding downstream 319399 35340673 ~ 35423135 (-)
G73533 NA non-coding downstream 382157 35275736 ~ 35360377 (-)
G73385 NA non-coding downstream 467796 35273610 ~ 35274738 (-)
G73381 NA non-coding downstream 474417 35267752 ~ 35268117 (-)
G73606 NA non-coding upstream 288606 36055996 ~ 36057458 (-)
G73609 NA non-coding upstream 426658 36194048 ~ 36194250 (-)
G73667 NA non-coding upstream 706853 36474243 ~ 36475948 (-)
G73704 NA non-coding upstream 878669 36646059 ~ 36652043 (-)
G73722 NA non-coding upstream 921967 36689357 ~ 36730561 (-)
AMCG00014839 tmem50b,LOC101064157,LOC101067980 other downstream 133857 35580626 ~ 35608677 (-)
G73328 LOC101154678 other downstream 972555 34769583 ~ 34769979 (-)
AMCG00014825 NA other downstream 2623206 33070249 ~ 33119328 (-)
AMCG00014824 NA other downstream 2936239 32795005 ~ 32806295 (-)
G73127 NA other downstream 3123385 32597462 ~ 32619149 (-)
G73604 pdxk,LOC106574311,LOC105019670,LOC108428208,LOC107676865 other upstream 333968 36101358 ~ 36182351 (-)
G73612 NA other upstream 486384 36253774 ~ 36254187 (-)
AMCG00014845 NA other upstream 605761 36373151 ~ 36393493 (-)
G73833 NA other upstream 1557630 37325020 ~ 37325307 (-)
G73916 NA other upstream 2011943 37779333 ~ 37783575 (-)

Expression


Co-expression Network