AMCG00014845


Basic Information

Item Value
gene id AMCG00014845
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36373151 ~ 36393493 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014845
agtTTCTTCATATTGAGACCTGGGGATTTAAAAGGACTGCTCCATCTGCAGCTCTCTGCAGTAAATCACAAGAGCCCAAGAAAGCTGCAAAGAAGAATGTAGTTTCCACAGAGGAGAGAGCATCCCTGCTCACCAGCAGGACCACTGTGGGGTTTCCTGCAAAGGTCTTTTCTCCTTTCTGTATACCACCTGCAGTAGTGGGAAGGGACATGGTAGCAAATTCTACTGCTTCTGAAGCCATAAAGGCTGAGAATGCCACACCTGCAACTGATGTGTCCACTGTGGAGCCTGAGGGTGCTCCCCCTGTCCCAATGGAAACAGATGTCTCTACAGAAAGAGCACAACTTCTGCAGCATAGATCATATGTTGAATTCCCCAAGAAGGACCCTTGGCTGGTTTCTGACCGTGCTAAAACTGTGCTGACTGATCCTGTTGTGCCCAGCAGAGTTGGTAGTAGTGAGGCTGCAACTGAGGAATGGacctcttctttttcttcttcctcctcctcctccagctctgacTCTGACTCCGGTTCTGAGGATGAGAGGGAAGAGATAAAACAGTTGAAGAGTGAGATCCTCACAggtggaaaagaaaatgagacTTTCACAAAGCCAGCTGGTGAGAGTCTCTCCCCTTATCTTGGAGAAGAAGGGCCTGCACAGACTACTGCAACAAATGGGACTCCTGAACTCGTAATCCTTTCAGAGCCTGCCATGGCAAAAGAAGTCAAAACTCGCATTGCCAGCCTTCCCCAACAGCCTGTCTTGCAGCCCAAAGACACCGAGCAAGACATGCTTCCCATTATATCACAGCTGTCCTCAAATCCAGAGCAAGAACTTGACCACAAGGAGATGTCAGAGTGTGGAGTAGCTGTTCTTAACACTCCTGTAGCCAGCCCTGAAGTCATTGAAGATGTGGCCTGGGTTAAAGCTGGGGCTGCACCAGAGGAGCTGTTACCAGAACAGCCATTACCAGAAAACACTGCTTTGACTACAGCAGAGGATGCATTAAAGGAGGCCATGGCTCCACCAGCCAAAGAGCCAGAGTTTGACAATATGACCTACAAAAATCTTCAACACCATGAATACACCCCCTTCACCTTTGTGGACTACGATGTGGAATTGGCCAAGTACCGGCTGCCTCAGCCCTCTGCTGGCAGGATCTCCCCTCGCCACTGAGCTCCACACTAGGACATCTTGGGGGGGAAAACATTATTAACCTGATATCTACACTTTTCCAAATGTGATAATAAACCCCTTTAGCTGTACTCCAGGTataagtttgttttgttattgtcatttaaaGCCACAAACTGGTTGAGGACATGCTAGGATTAATAACTTACCAGCAACCAAACAAAGGTCAGGCAGAATGGCCACCTCTTCATTTAGACTGTTTATGGTACAGTAACTATTCTAGTTGTTCTCCATATGAAATGCAACTCTGGCTGTTAACTAAATTTACATTGCAATTAGAATGCATCAAAACAACATTGCAGTATATACTGTCAGCAGGTGGTGAAGGACCAACCTATAACAATTGTTGAAAGATTAGTGAGTTTAAAAGTATTCAGTATAACTTTATATTGCACATCTCTTTCAGGTAATTATggctttgcaaaataaaaagttgaacaTTCTCATGATCTATATGTATGGCCTATGAGTTATGGCATTGCTTATACAGTTTCAAAAGACATTGTAGCAACTAGTAATTTTGTAGTGCAGGTGTACAACACAACTGTTTAGGAACtggaaaaactgaagaaataaaTGTTGGCCTACAAATGTGGGCAAATCAttaaacagaataacaacaccAATACACTATTTAGGAA
>TU92007
tttttgtaatgcaaacTGCTGTGGAATTTAGAAAACGAGCAAATACTGTTGTCTAACGTTCTTTTTGTTTTACGTAaatcgtttgtttgttttggtatttagCCAAATTCCTTGCTCTTATCTACGAACACTTGGATCTACCACCTGAAGTGGTAAATCGCAAAAggcacattcattttaatacatattgtatatataacatacaaTGCATTAGTGGAATGGACTGTtttgtactataaaaacaaacGTTTTTGCattgctctttttatttttaagtatatgACCgtgaaaatgacattttgttCTGCAAAATGCTGTAAACGCTGTAAAGTATGAAGCTGGTGCAGCACGAAGGGAACTTTGATTGCATATCTGTGAGAGAATTCAGTCCTAATCACAGAAGTTAATGTAATCAAAGTTCCCTTCGTGCTGCAACAGCTTcatactttacagtgtaatcagaaaatgggccatttaatcagttcacatcagattaagtagctttacgatccgttaataatctttaattaatagCAATCTTTATTCTTACTCATTGTTGGGACACTTAAGGTTTAAATAATCACAttctgatcaaattaattacaacagattttgtttgtgtgtgtacaatattatatatacactggtttcgaatctacattaaacctgtgcattcagagaaatacacatgtacaatattttgtatgtattattatggatttccttgccaggtgtgcaacttacaaattcacataatacGTGGAAATTAGGTTATAATGTATACGTACACCACTACACATGCATAATCTTTTATTGTTGAActgtcaatctttaaaatatattatttctgttgtaaTTATTTCTGCCATATCTGCCATATCTAGCATGAAATTCATAAGATCCTTCATGACATGACTCAAGGGTGATTCACACCCCCTGACTACGTGGCGCTGCCCATgcagtgtctctgtctttgAATGATACACGCTTCTTTGTCACAAAGCGCTACTTTGTTGTTGTGAAGCCGCGGCTGCTCCAGCGCAGTCCCTCTAGAGAAGCTGCGCGGCTGTGCAGATTTTGCAGCCTGTGGTTGCGTCACATTGTGACGTATTTTCCGACTGGGTTCATGCAGACAGGTCACTTGGACAGATTCGTCGCAGAGTCTGCGAAAAGTCTGCGCAGACTTGGCAAAGTATGCGTGTCGTGAACGCGGCCTATTTATTAAGACAACAAGATGGCGGCCTCCATATGGCGAGTAGGACGAGTTGGGGCTCTCAAGtTTCTTCATATTGAGACCTGGGGATTTAAAAGGACTGCTCCATCTGCAGCTCTCTGCAGTAAATCACAAGAGCCCAAGAAAGCTGCAAAGAAGAAGGCCATGGCTCCACCAGCCAAAGAGCCAGAGTTTGACAATATGACCTACAAAAATCTTCAACACCATGAATACACCCCCTTCACCTTTGTGGACTACGATGTGGAATTGGCCAAGTACCGGCTGCCTCAGCCCTCTGCTGGCAGGATCTCCCCTCGCCACTGAGCTCCACACTAGGACATCTTGGGGGGGAAAACATTATTAACCTGATATCTACACTTTTCCAAATGTGATAATAAACCCCTTTAGCTGTACTCCAGGTataagtttgttttgttattgtcatttaaaGCCACAAACTGGTTGAGGACATGCTAGGATTAATAACTTACCAGCAACCAAACAAAGGTCAGGCAGAATGGCCACCTCTTCATTTAGACTGTTTATGGTACAGTAACTATTCTAGTTGTTCTCCATATGAAATGCAACTCTGGCTGTTAACTAAATTTACATTGCAATTAGAATGCATCAAAACAACATTGCAGTATATACTGTCAGCAGGTGGTGAAGGACCAACCTATAACAATTGTTGAAAGATTAGTGAGTTTAAAAGTATTCAGTATAACTTTATATTGCACATCTCTTTCAGGTAATTATggctttgcaaaataaaaagttgaacaTTCTCATGATCTATATGTATGGCCTATGAGTTATGGCATTGCTTATACAGTTTCAAAAGACATTGTAGCAACTAGTAATTTTGTAGTGCAGGTGTACAACACAACTGTTTAGGAACtggaaaaactgaagaaataaaTGTTGGCCTACAAATGTGGGCAAATCAttaaacagaataacaacaccAATACACTATTTAGGAAGCACTGGGAAGTACAGTGTTATACACAGACTAGAtcatatgattataattatgaaaaaggTAAGTCtctatgaaattaaataaattgcccATAACAAAACGCAGTTTAAATAGCTTCTCACTAAGCTCACGTCTTCATTTCCCGTCTATAAATTTAAGTATGggtaatttgttttacatactAAATAATTCAACATCACACTTGACTGGAAAGTATTTTGACACCTAATGTGTTACAAAGATGTCATTCCATCTGTTTTCCCCATTCTCTTTCGGTTCAGTCTTTCTTCTATGTTGAATTACCCCACTTTCTGTGGGGCAAAGTTGAATAGATGCAAGAAACCCAAAACCCACAGTACACATTGAAAAAGACAAGAATAAAACGGt

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:0045333 cellular respiration biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014845 False 1840 mRNA 0.44 3 36373537 36390780
TU92007 True 2582 TUCP 0.38 3 36373151 36393493

Neighbor

gene id symbol gene type direction distance location
AMCG00014844 NA coding downstream 40670 36173845 ~ 36332481 (-)
AMCG00014843 NA coding downstream 299843 36062619 ~ 36073308 (-)
AMCG00014840 agpat3,LOC102793782 coding downstream 386583 35978206 ~ 35986568 (-)
AMCG00014842 trappc10,LOC107726887 coding downstream 558713 35792348 ~ 35814438 (-)
AMCG00014841 NA coding downstream 605761 35742534 ~ 35767390 (-)
AMCG00014847 NA coding upstream 70961 36464454 ~ 36526810 (-)
AMCG00014846 LOC107578620 coding upstream 146325 36539818 ~ 36570308 (-)
AMCG00014849 NA coding upstream 409739 36803232 ~ 36804839 (-)
AMCG00014851 rac2,LOC107561353,LOC105892187,LOC108436672,LOC106522484 coding upstream 537514 36931007 ~ 36944739 (-)
AMCG00014855 NA coding upstream 650717 37044210 ~ 37047479 (-)
G73609 NA non-coding downstream 178901 36194048 ~ 36194250 (-)
G73606 NA non-coding downstream 315693 36055996 ~ 36057458 (-)
G73568 LOC107575789 non-coding downstream 530160 35434969 ~ 35842991 (-)
G73562 NA non-coding downstream 908486 35391184 ~ 35464665 (-)
G73548 NA non-coding downstream 950016 35340673 ~ 35423135 (-)
G73667 NA non-coding upstream 80750 36474243 ~ 36475948 (-)
G73704 NA non-coding upstream 252566 36646059 ~ 36652043 (-)
G73722 NA non-coding upstream 295864 36689357 ~ 36730561 (-)
G73776 NA non-coding upstream 622457 37015950 ~ 37016173 (-)
G73803 NA non-coding upstream 779437 37172930 ~ 37173171 (-)
G73612 NA other downstream 118964 36253774 ~ 36254187 (-)
G73604 pdxk,LOC106574311,LOC105019670,LOC108428208,LOC107676865 other downstream 190800 36101358 ~ 36182351 (-)
AMCG00014839 tmem50b,LOC101064157,LOC101067980 other downstream 764474 35580626 ~ 35608677 (-)
G73328 LOC101154678 other downstream 1603172 34769583 ~ 34769979 (-)
AMCG00014825 NA other downstream 3253823 33070249 ~ 33119328 (-)
G73833 NA other upstream 931527 37325020 ~ 37325307 (-)
G73916 NA other upstream 1385840 37779333 ~ 37783575 (-)
AMCG00014865 NA other upstream 1408601 37802094 ~ 37864483 (-)
G74087 NA other upstream 1949829 38343322 ~ 38350291 (-)
G74107 NA other upstream 2018667 38412160 ~ 38413231 (-)

Expression


Co-expression Network