AMCG00014846 (LOC107578620)


Basic Information

Item Value
gene id AMCG00014846
gene name LOC107578620
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36539818 ~ 36570308 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014846
TTGATGATATAAAATGTCAGATGTGGGATCCGACGAATTTGAAGAAGAGCAAGGACACTACCTCGGGaacctaggactCACCCTCGAGcatgcgctctcctacactcagcacgtcaccatgctgacacgcatctgcagattcttcctgagcaacatacaccgaatccgacccttcctcaccaactactcgactcagctgctcgtccagtccctggtcctctcccgcctggactaatGCAACACCCTCCTGGCCGGCATgtctgcaactactacccgcccactccagctcatccagaactttGCTGCTCGCCTGGAATATGAAGGGGACCGCAATGCAGCTGATGAGAGACATGGCATAGGGAAAGCTGTTTTGCCTAATGGGGATACCTTTCAAGGACaatatgaaaatggaaaaaggaaTGGACAGGGAACCTACAGATTCAAAAGTGGAGCTCGGTACACTGGTGAATATTATATGAACAAAAAGCATGGTCAGGGCACATTCTACTACCCTGATGGATCAAAGTATGAAGGTGGCTGGGCTGATGATCTGCGGCAAGGCCATGGagtgtacacatacataaacgGAGACACGTATGACGGGGAGTGGATGAATCACCAAAGGCATGGGCAgggtgtgtatacatacatggATACAGGATCAAAGTATGTAGGCACTTGGGCAATGGGCCAGCAGGAGGGAGCTGgagaatatatatatctcaaCCACAGATTTCAAGGAAATTTCCTCAACAGCAAGcCTTTTGGACCAGGAAAATACATCTTTGAAATTGAATGTGAGCAACAAGGGGACTTCCTTCAAGTGGAACAGGACAAAGGTGATGCTGAAGATGCAGATCCCCTTAGTGTCACTGTGCTGAAGTGGAAGGCAGAAAAAGTGACAGGCATGACCCTTTGGACTCCAGCTGAGgagaaaaaacagcagacagcAGCACCTGGGAAGATGGGGGAGGATGAAGTTCTGTCCACTAAGAGCCAGCCTGTGATTacagaggagaaggagaagaaagaacTTGTACCTGAACCAGAGTCAAAGCAAGAGCCAGAGTCACAGCCAGAGCCAGAGGAGACTCAGACCACTGCTACTGGAGTTGAGGACAAGGAGTCTATGAATGCATAAAAACACCAAACCAAACACCGAACATGCCTTGATTGATTATAGACAATCAAATTGCAATTTTATATCCTAAAATAATGAGATTTTAGCATACAAGTATTCTGTTTTGTcataacatttataattaacatttctaatttagaaatagtttaaatgtccCGGTTTTTAGCTTTC

Function

NR:

description
PREDICTED: radial spoke head 1 homolog

GO: NA

KEGG:

id description
K19755 RSPH1; radial spoke head protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014846 True 1312 mRNA 0.46 9 36539818 36570308

Neighbor

gene id symbol gene type direction distance location
AMCG00014847 NA coding downstream 13008 36464454 ~ 36526810 (-)
AMCG00014844 NA coding downstream 207337 36173845 ~ 36332481 (-)
AMCG00014843 NA coding downstream 466510 36062619 ~ 36073308 (-)
AMCG00014840 agpat3,LOC102793782 coding downstream 553250 35978206 ~ 35986568 (-)
AMCG00014842 trappc10,LOC107726887 coding downstream 725380 35792348 ~ 35814438 (-)
AMCG00014849 NA coding upstream 232924 36803232 ~ 36804839 (-)
AMCG00014851 rac2,LOC107561353,LOC105892187,LOC108436672,LOC106522484 coding upstream 360699 36931007 ~ 36944739 (-)
AMCG00014855 NA coding upstream 473902 37044210 ~ 37047479 (-)
AMCG00014856 NA coding upstream 498563 37068871 ~ 37073768 (-)
AMCG00014854 NA coding upstream 509849 37080157 ~ 37115666 (-)
G73667 NA non-coding downstream 63870 36474243 ~ 36475948 (-)
G73609 NA non-coding downstream 345568 36194048 ~ 36194250 (-)
G73606 NA non-coding downstream 482360 36055996 ~ 36057458 (-)
G73568 LOC107575789 non-coding downstream 696827 35434969 ~ 35842991 (-)
G73562 NA non-coding downstream 1075153 35391184 ~ 35464665 (-)
G73704 NA non-coding upstream 75751 36646059 ~ 36652043 (-)
G73722 NA non-coding upstream 119049 36689357 ~ 36730561 (-)
G73776 NA non-coding upstream 445642 37015950 ~ 37016173 (-)
G73803 NA non-coding upstream 602622 37172930 ~ 37173171 (-)
G73851 NA non-coding upstream 947735 37518043 ~ 37518331 (-)
AMCG00014845 NA other downstream 146325 36373151 ~ 36393493 (-)
G73612 NA other downstream 285631 36253774 ~ 36254187 (-)
G73604 pdxk,LOC106574311,LOC105019670,LOC108428208,LOC107676865 other downstream 357467 36101358 ~ 36182351 (-)
AMCG00014839 tmem50b,LOC101064157,LOC101067980 other downstream 931141 35580626 ~ 35608677 (-)
G73328 LOC101154678 other downstream 1769839 34769583 ~ 34769979 (-)
G73833 NA other upstream 754712 37325020 ~ 37325307 (-)
G73916 NA other upstream 1209025 37779333 ~ 37783575 (-)
AMCG00014865 NA other upstream 1231786 37802094 ~ 37864483 (-)
G74087 NA other upstream 1773014 38343322 ~ 38350291 (-)
G74107 NA other upstream 1841852 38412160 ~ 38413231 (-)

Expression


Co-expression Network