AMCG00014847


Basic Information

Item Value
gene id AMCG00014847
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36464454 ~ 36526810 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014847
ATGGCGCCTATGCTACAACAACCAGAAGTTCAGTTCGCGCAGAGATTAGCTTCTAATGAAAAACCTATACGTACGAGAGCCATTAAGAAGCTGAGGAAGTATCTCAGCATTCGAACACAAAAGGATAAAGGAGCGTTTACGAATGATGAACTACTCAAAATATGGAAGGGACTCTTCTACTGCATGTGGATGCAAGACAAACCACTGTTACAGGCGAGTGAAGAGCTCTCTGCTGTCATATCCAATCTGATCCATGCCTTGCAGAATGTGGATACCCaaTTTGTATATCTTGAGACATTTCTGCAGACTATGAACCGTGAGTGGACTGGCATCGACAGACTCCGTTTGGATAAATTTTACATGAGATTCACTGAACTGCTTACAGCTCAGATCCTTCGCAGTACCAGTGGCTGCCCATCAGGGATTCAGTTCCACGTCCTTGATATTTACATGGCAGAGCTTGCAACTGTTGGATCACAAGAGGCCATATCAGGAAGCATCTTCAATGAGATTGTGGACCAGGCTCCCTTTGCTATTGAGGACCTAATGAAGGAGCTCAATCAAAAGGGGAATGATTTGGACTTTGAAGAAGTTGAACATTTAGATCTTTCAAGCACCTCCAAGAAAATCAAAGGACCGCGAGTAAATGTGGCAATATCGAAATGTGACACTAAAGATTCTCTTCCCTACATggcaggaaataaaaatgaaaaagattatGAATCTGAAGATGAGGAATCTGATTTGGAAGATGGTTTTGAACCACAAGATGACAGTGACGGAATAGGGCCAGTGCTTCAGGGCAGGCCTAACAAGCCAGGCCCATTATTCCAAGACCTAAGTGAAGGTGTCTTCCCCCAGGATGAATACCCAGAGGAAGTGTCAAcggatgaagatgatgatgagaTGTTTGGCAGTCGCAAGAGgttgaagaggaggaggaatgaaGTAGTAGTGATGGATAATACAGAAAAAGGAAAGGGGAAAGgcaaaaagaaaactgctgtgAAGACATCCATGCTGCAGGAACAAAATGAATCTATGTTGCAGGACATGGAGCCGATTGAGGCAACtaataccttgaccaagaagaaaagaaagaaaaaaggcaggAGAAAGTCTGAGATGGATAAGAATACATTACTGAAATCTCCTGTGGTGAGCAAAGAACCAGGTCCTGTAGGGTTTACTGAGTCAAAGCTAGTGCACGCTCAACCTTTAGTTCAAAAGGCCAACAAGAAGAAGAAACGGAAACTGGAGCAGGCTGGCCCCGAAGATTATGTCTGTGATGTGACTGGGCAGACAGGGAATGGAGAAAAGCAGAATACAGAGAAGCTCAAGAAAGTGAAGATGCAGGAGTGTCTGCAGACCCAGGAAGAATACAAACAACAAGGTGTCCCTGAGGAGTTGACTTCTTCTGAAATTAAGAGAACGCAGAAGAAGCAACGGCAGATGATTCAGACAGCTATGGAGAGCACACAGGTGCACATCTCTACAGACCACAGAGGTGCAGAAGACATGGTTCCGTTCACATCAGCAACAGCAGAGCAGGAGGAAATGAGCCAAGTAAAAtcgaaaaagaaaaggaagctggTGGAGACTGAGCCCAGCAATCTCAATGGCCATAGAGGAAGCAagggcaagaaaaacaaaaagataattGACAGCCCATCCATTTTGATCTCCGGAAACGCCAAAAAGTCACTCAAAAATCCCAAGTCAAAACCGGAGACTGATTTTGTGAAATTTGAAACTCCCTCCATACCTGCACCATTGTTCTTCAGAAAAGCCAAAGGAAGCCCTTGTactgcagtaaaaaaaacacagggATTTCAGACGCCAAAGTCAGAGTCTAAGAAAGTCACCTTTGGGCTGAAGAATAACAAAACGGCAGAGttcaaaaaaacagacaaaagcatTTTAGTGAGTCCAGAGGGAACATCACGTATTGCTTTTGACCCCACGCAGAAGCCCCTGTTTGGAGTCCTCAAGTCCCCAGCCATTAGGTTGAGCTCTCAGCTGAAGACCATGACTGCCTCCGCAcGGATTCTCAGTCCAGCATTTCAGGTTTCGTTCCTAAAGGCGGTGCTGGTACGATGCAGCGTGTATCGAAAG

Function

GO: NA

KEGG:

id description
K14849 RRP1; ribosomal RNA-processing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014847 True 2115 mRNA 0.45 15 36464454 36526810

Neighbor

gene id symbol gene type direction distance location
AMCG00014844 NA coding downstream 131973 36173845 ~ 36332481 (-)
AMCG00014843 NA coding downstream 391146 36062619 ~ 36073308 (-)
AMCG00014840 agpat3,LOC102793782 coding downstream 477886 35978206 ~ 35986568 (-)
AMCG00014842 trappc10,LOC107726887 coding downstream 650016 35792348 ~ 35814438 (-)
AMCG00014841 NA coding downstream 697064 35742534 ~ 35767390 (-)
AMCG00014846 LOC107578620 coding upstream 13008 36539818 ~ 36570308 (-)
AMCG00014849 NA coding upstream 276422 36803232 ~ 36804839 (-)
AMCG00014851 rac2,LOC107561353,LOC105892187,LOC108436672,LOC106522484 coding upstream 404197 36931007 ~ 36944739 (-)
AMCG00014855 NA coding upstream 517400 37044210 ~ 37047479 (-)
AMCG00014856 NA coding upstream 542061 37068871 ~ 37073768 (-)
G73609 NA non-coding downstream 270204 36194048 ~ 36194250 (-)
G73606 NA non-coding downstream 406996 36055996 ~ 36057458 (-)
G73568 LOC107575789 non-coding downstream 621463 35434969 ~ 35842991 (-)
G73562 NA non-coding downstream 999789 35391184 ~ 35464665 (-)
G73548 NA non-coding downstream 1041319 35340673 ~ 35423135 (-)
G73704 NA non-coding upstream 119249 36646059 ~ 36652043 (-)
G73722 NA non-coding upstream 162547 36689357 ~ 36730561 (-)
G73776 NA non-coding upstream 489140 37015950 ~ 37016173 (-)
G73803 NA non-coding upstream 646120 37172930 ~ 37173171 (-)
G73851 NA non-coding upstream 991233 37518043 ~ 37518331 (-)
AMCG00014845 NA other downstream 70961 36373151 ~ 36393493 (-)
G73612 NA other downstream 210267 36253774 ~ 36254187 (-)
G73604 pdxk,LOC106574311,LOC105019670,LOC108428208,LOC107676865 other downstream 282103 36101358 ~ 36182351 (-)
AMCG00014839 tmem50b,LOC101064157,LOC101067980 other downstream 855777 35580626 ~ 35608677 (-)
G73328 LOC101154678 other downstream 1694475 34769583 ~ 34769979 (-)
G73833 NA other upstream 798210 37325020 ~ 37325307 (-)
G73916 NA other upstream 1252523 37779333 ~ 37783575 (-)
AMCG00014865 NA other upstream 1275284 37802094 ~ 37864483 (-)
G74087 NA other upstream 1816512 38343322 ~ 38350291 (-)
G74107 NA other upstream 1885350 38412160 ~ 38413231 (-)

Expression


Co-expression Network