Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00014886 |
| gene name | syngr1,syngr1a |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 38330131 ~ 38339363 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| syngr1a | Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Is expressed in nervous system; neural crest; optic vesicle; and pigment cell. Orthologous to human SYNGR1 (synaptogyrin 1). |
| syngr1 | Predicted to be involved in regulated exocytosis; regulation of neuronal synaptic plasticity; and synaptic vesicle membrane organization. Predicted to act upstream of or within cellular response to leukemia inhibitory factor and protein targeting. Predicted to be located in synaptic vesicle. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Predicted to be integral component of synaptic vesicle membrane. |
| description |
|---|
| PREDICTED: synaptogyrin-1 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00014886 | True | 953 | mRNA | 0.56 | 4 | 38330131 | 38339363 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00014885 | NA | coding | downstream | 13114 | 38303052 ~ 38317017 (-) |
| AMCG00014883 | NA | coding | downstream | 66647 | 38261530 ~ 38263484 (-) |
| AMCG00014879 | NA | coding | downstream | 170044 | 38141907 ~ 38160087 (-) |
| AMCG00014878 | NA | coding | downstream | 201386 | 38126043 ~ 38128745 (-) |
| AMCG00014874 | NA | coding | downstream | 278019 | 38047486 ~ 38052112 (-) |
| AMCG00014888 | cacng2,LOC103372897,LOC102214005,LOC101463732,LOC100710835,LOC108237679 | coding | upstream | 24539 | 38363902 ~ 38402794 (-) |
| AMCG00014889 | NA | coding | upstream | 76039 | 38415402 ~ 38423841 (-) |
| AMCG00014894 | gtpbp1,gtpb1,LOC106606809,LOC106601690 | coding | upstream | 261058 | 38600421 ~ 38629200 (-) |
| AMCG00014895 | NA | coding | upstream | 337046 | 38676409 ~ 38688061 (-) |
| AMCG00014897 | NA | coding | upstream | 389626 | 38728989 ~ 38836352 (-) |
| G74052 | NA | non-coding | downstream | 46614 | 38281437 ~ 38283517 (-) |
| G74030 | LOC106607450,LOC105029658,LOC103393291,LOC102224681,LOC103147375,LOC101072687 | non-coding | downstream | 149533 | 38177974 ~ 38180598 (-) |
| G73980 | NA | non-coding | downstream | 258514 | 38063347 ~ 38071617 (-) |
| G73918 | NA | non-coding | downstream | 503429 | 37826479 ~ 37826702 (-) |
| G73911 | NA | non-coding | downstream | 626083 | 37703846 ~ 37704048 (-) |
| G74128 | NA | non-coding | upstream | 148899 | 38488262 ~ 38488479 (-) |
| G74137 | NA | non-coding | upstream | 166829 | 38506192 ~ 38575968 (-) |
| G74167 | NA | non-coding | upstream | 309559 | 38648922 ~ 38649290 (-) |
| G74174 | NA | non-coding | upstream | 322775 | 38662138 ~ 38662455 (-) |
| G74206 | NA | non-coding | upstream | 383241 | 38722604 ~ 38750977 (-) |
| AMCG00014865 | NA | other | downstream | 465648 | 37802094 ~ 37864483 (-) |
| G73916 | NA | other | downstream | 546556 | 37779333 ~ 37783575 (-) |
| G73833 | NA | other | downstream | 1004824 | 37325020 ~ 37325307 (-) |
| AMCG00014845 | NA | other | downstream | 1936638 | 36373151 ~ 36393493 (-) |
| G73612 | NA | other | downstream | 2075944 | 36253774 ~ 36254187 (-) |
| G74087 | NA | other | upstream | 3959 | 38343322 ~ 38350291 (-) |
| G74107 | NA | other | upstream | 72797 | 38412160 ~ 38413231 (-) |
| G74115 | NA | other | upstream | 92900 | 38432263 ~ 38432875 (-) |
| AMCG00014891 | NA | other | upstream | 149256 | 38488619 ~ 38492954 (-) |
| G74160 | NA | other | upstream | 258005 | 38597368 ~ 38644538 (-) |
