AMCG00014888 (cacng2,LOC103372897,LOC102214005,LOC101463732,LOC100710835,LOC108237679)


Basic Information

Item Value
gene id AMCG00014888
gene name cacng2,LOC103372897,LOC102214005,LOC101463732,LOC100710835,LOC108237679
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38363902 ~ 38402794 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014888
ATGGGCCTCTTTGACCGCGGCGTCCAGATGCTACTGACCACGGTGGGCGCTTTCGCCGCCTTCAGCCTCATGACCATCGCGGTGGGCACGGACTACTGGCTGTACTCGCGGGGCGTCTGCAAGACCAAGTCCGTGAGCGAGAACGAGACCAGTAAGAAGAACGAGGAGGTCATGACTCACTCGGGGCTCTGGAGGACGTGTTGCTTAGAAGGGAATTTTAAAGGGCTGTGTAAACAGATCGACCACTTTCCAGAGGACACTGACTACGAGGCTGACACTGCAGAGTACTTCTTACgtgcAGTGCGAGCCTCCAGTATATTCCCCATCCTGAGTGTAATCCTCCTGTTCATGGGAGGCCTGTGTATCGCCGCCAGTGAGTTCTACAAGACCAGGCACAACATCATCCTCAGCGCGGGCATCTTCTTTGTGTCGGCagGCCTGAGCAACATCATCGGGATCATCGTGTACATATCAGCCAACGCGGGTGACCCGTCCAAGAGCGACTCGAAGAAGAACAGCTACTCGTATGGCTGGTCCTTCTACTTCGGCGCCCTGTCCTTCATCATCGCTGAGATGGTGGGCGTGCTGGCAGTGCACATGTTTATCGACCGGCACCGGCAGCTGCGAGCCGGGGCGCGCGCCACTGACTACCTGCAGAGCTCGGCCATCACCCGCATCCCCAGTTACCGGTACCGGTACCGGCGCCGTTCGCGGTCCAGCTCACGCTCCACCGAGCCCTCGCACTCGCGCGACACCTCGCCCGTGGGCCTGAAGGGCTTCAACACCCTGCCCTCCACCGAGATCTCCATGTACACCCTTACCAGGGACACACTCAAgtctgcccccacccccaccgccACCTACAACTCCGAGAGGGACCACAACTTCCTGCAGGTCCACAACTGCGTGCAAAAGGACCTCAAGGACTCGGCCCACACCAACACTGCCAACCGCCGCACCACGCccgtatga

Function

symbol description
cacng2 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within several processes, including membrane depolarization; membrane hyperpolarization; and neuromuscular junction development. Predicted to be located in endocytic vesicle membrane and plasma membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Implicated in autosomal dominant non-syndromic intellectual disability 10.

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-2 subunit

GO: NA

KEGG:

id description
K04867 CACNG2; voltage-dependent calcium channel gamma-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014888 True 972 mRNA 0.60 4 38363902 38402794

Neighbor

gene id symbol gene type direction distance location
AMCG00014886 syngr1,syngr1a coding downstream 24539 38330131 ~ 38339363 (-)
AMCG00014885 NA coding downstream 46885 38303052 ~ 38317017 (-)
AMCG00014883 NA coding downstream 100418 38261530 ~ 38263484 (-)
AMCG00014879 NA coding downstream 203815 38141907 ~ 38160087 (-)
AMCG00014878 NA coding downstream 235157 38126043 ~ 38128745 (-)
AMCG00014889 NA coding upstream 12608 38415402 ~ 38423841 (-)
AMCG00014894 gtpbp1,gtpb1,LOC106606809,LOC106601690 coding upstream 197627 38600421 ~ 38629200 (-)
AMCG00014895 NA coding upstream 273615 38676409 ~ 38688061 (-)
AMCG00014897 NA coding upstream 326195 38728989 ~ 38836352 (-)
AMCG00014902 NA coding upstream 736029 39138823 ~ 39176661 (-)
G74093 NA non-coding downstream 23686 38309085 ~ 38340216 (-)
G74052 NA non-coding downstream 80385 38281437 ~ 38283517 (-)
G74030 LOC106607450,LOC105029658,LOC103393291,LOC102224681,LOC103147375,LOC101072687 non-coding downstream 183304 38177974 ~ 38180598 (-)
G73980 NA non-coding downstream 292285 38063347 ~ 38071617 (-)
G73918 NA non-coding downstream 537200 37826479 ~ 37826702 (-)
G74128 NA non-coding upstream 85468 38488262 ~ 38488479 (-)
G74137 NA non-coding upstream 103398 38506192 ~ 38575968 (-)
G74167 NA non-coding upstream 246128 38648922 ~ 38649290 (-)
G74174 NA non-coding upstream 259344 38662138 ~ 38662455 (-)
G74206 NA non-coding upstream 319810 38722604 ~ 38750977 (-)
G74087 NA other downstream 13611 38343322 ~ 38350291 (-)
AMCG00014865 NA other downstream 499419 37802094 ~ 37864483 (-)
G73916 NA other downstream 580327 37779333 ~ 37783575 (-)
G73833 NA other downstream 1038595 37325020 ~ 37325307 (-)
AMCG00014845 NA other downstream 1970409 36373151 ~ 36393493 (-)
G74107 NA other upstream 9366 38412160 ~ 38413231 (-)
G74115 NA other upstream 29469 38432263 ~ 38432875 (-)
AMCG00014891 NA other upstream 85825 38488619 ~ 38492954 (-)
G74160 NA other upstream 194574 38597368 ~ 38644538 (-)
G74247 LOC100136012,LOC107575789 other upstream 495301 38898095 ~ 38920353 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025421 cacng2a coding NC_007114.7 CM002887.2 29714775 ~ 29845175 (+)
grasscarp (Ctenopharyngodon idella) G275519 NA non-coding CI01000069 null 2065208 ~ 2155034 (-)