AMCG00014891


Basic Information

Item Value
gene id AMCG00014891
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38488619 ~ 38492954 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014891
ATGGGCGCCATGGAGGCGGACGGAGGGGCGGGGGAGCCGGGGGAGACTGGGCTGTCGTGGCACGGCGGTGACAAGGGCTACGTGTGGCTGGCCATCTGCAGCCAGAACCAGCCCCCCTATGAGACCATACCGCAGCACATCAACAGCACGGTGCATGATCTGCGGCTCAACGAGAACAAGCTCAAGGTGGTGCTCTTCAGCTCCCTGAGCCGCTTCACCAACCTGACAGACCTCAACTTAACCAAGAATGAGATCTCCTATGTGGAGGACGGGGCCTTTGCTGGCCAGGCTAACCTGCAGGTGTTGCAGTTGGGCTACAACCGGCTGACCAACCTGACAGAGGGCATGCTGCGGGGCCTGGGCCGCCTGCAGTGCCTCTTCGTGCAGCACAACCTCATCGAGTCCATCTCACCCAGCGCCTTCTGGGAGTGCCCAGGCCTCAGCAGCCTGGACCTGTCCTCCAACAAGCTGGCCCGGCTGGACCCGTCCACCTTCAGCGGGCTGGGCCGGCTGATGGTGTGCGAGTTGGCTGGCAACCCCTTCCACTGTGGCTGTGACCTCTTCAGCTTTTTGGCCTGGCTGGAGGCCTTCAACAACGTCACGCGTACCTACGACCGCCTGCAGTGCGAGACACCCCGGGAGTTATTTGGGTTCTCTTTGCTCAGTCCACTGGGAGGTACCGGGGGCGGCGGCGGGGGagggggcggtggggggggaCAAGGCCACAACGCCAAGTCCGTCCTGGCCTCCATGTGCCGTGACGGCGTGATTATCCCAGGCTTGGCCACCCTCTCCTCCCCCCAGGACCCATATGAGGGCTCGGGCGGGCCGGACGCGGCAGAGATGCTTGGCCCCTTCCAGCCCACCCTGCCCTCCACCGCCGACCCCGCTGTGAGCCCCAGCATCAAGTTGCACCAGGTCTCCCTCTCCTCGGCCACAATACTGGTCCAGATCCCTCGGCCCTACAGCAAGATGTATATCCTGGTACAGTACAACAGCAGTTACGTGTCCGACGTCAAGAACCTAAAGAACCGCAAAGAGATCATCACCCTGGACAAACTGGAGGcccacacaaactacaccttcTGCGTGGCCTCTATCCGCAACCAGCAGCGGCACAACCACACCTGCCTGCGATTCTCAACTCGTGCCCAGGGCCCCGATGACATGCGGCCCAGCCCCTCCACCACCACTCACTACATCATGACCGTGCTGGGCTGCCTCTTCGGGATGCTTATCGTATTGGGCCTGGTCTATTACTGCCTGCGCAAGCGGCGGCTGcaggaagagaaggaaaagtCCATCAGTGTCAAGAAGACCATCCTGGAGATGCGCTACGGGCCCGAGGTAGCGGCAGCGGCAACGGGGGCAGGGGTTGGCGTCGACCCCTCCAAGCTCCACGACCCaggccaccaccaccaccaccaccacccccaccgACACGGCAAgatccccaccaccaccacctcctcctcctcttcctcctgccacccagcaggaggaggaggcccAGGCACAGGTTCCTCCCGCCTTTCCTCCATCCCTCAGGCTGAGAAACTGGCCACGGCATTCTCTGAGGCCGCTGcactggctgctgctgctgctgcctccaAGGGGAACTACATGGATGTGCGCACCTCGGAAGGGGGGGTGAGGGGCGGTTTGGGgatggggagagggggaggggagggggaaccgagggagggggagggctcGGAGGGTGGCAGCGGCGGGGGCGGAGGCGGCGAGGAGGAGGAGTCCGACGACGACGGCAGAGGCTCAGTCTCTGAGATCTCCACCATTGCAAAGGAGGTGGACAAGGTCAACCAGATCATCAACAACTGCATCGATGCCCTCAAGCTGGACTCTGTGGCCAATGCTGCCGCTGCCGCTGCCGCCACCGCCGCCCAGCACCCACCGTCCCTACCCCCACCCTTGGCCACCaccgccccctcctcctcttcctccgcatcctccgcctcctcctgcGCCTCCTCCTGTGCCTCTTCCTCTTGTCCCGCCCCTTCCCTGTCCCGGGGCCTTCTCCCCAGGCAGCTGAGTGCGGACGCCGCGGTGGGAGGGGGAGCTCTGGGCCCAGGCAAGAAGCGCTGCAGCGTGTCCTCGGGGGGGTCCATCCGCAGCGCCCGGGTCTTCTCCTTGGACGTGCCCGAGCCACGCAGCCCCGACCCTGGCCTTTACCCCGAGCGCAGCAGCCCCCTGAGCTGTGGGGAGCCCCTTGAAAGGCTGCCATTGATGGGCAGCggtggtgggggaggaggaggaggaggaggaggaggaggaggggcagGGGGGGGTGGTAGCAGTGCGGTCCTGCACCACTTAGAAGTGGGTGGGGCCTACCACTGCTCAGAGCATCGCCACTCCTTCCCAGCGCTGTACTACGAGGGCCCTGCAgagccctccccctcctccccgccTTCCTCTGCCGCCTCCACATCCTCCCAGAAGGCCTCGGTCTTCCTCAAGCCACTGGGCCGTGCCAAACGGGATGCCACCGCCTCCTACTCGCAGCTCTCGCCCCGCCACCACTACTCCGGTTACTCCTCCAGCCCTGAGTACTCCTCGGAGAGCACACTGCGCATCTGGGAGCGCTTCCGACCCTACCGCAAGGGCCCCCGCGACGCTGCCTCCTGCGTGACGGCTGGTCATGCCCTGCGCAAGAAGGTGCAGTTTGCCAAGGACGAGGACCTGCATGACATACTGGACTACTGGAAGGGGGTGTCCGCTCAGCAGAAGCTGTAA
>TU92559
GCCAAGTCCGTCCTGGCCTCCATGTGCCGTGACGGCGTGATTATCCCAGGCTTGGCCACCCTCTCCTCCCCCCAGGACCCATATGAGGGCTCGGGCGGGCCGGACGCGGCAGAGATGCTTGGCCCCTTCCAGCCCACCCTGCCCTCCACCGCCGACCCCGCTGTGAGCCCCAGCATCAAGTTGCACCAGGTCTCCCTCTCCTCGGCCACAATACTGGTCCAGATCCCTCGGCCCTACAGCAAGATGTATATCCTGGTACAGTACAACAGCAGTTACGTGTCCGACGTCAAGAACCTAAAGAACCGCAAAGAGATCATCACCCTGGACAAACTGGAGGcccacacaaactacaccttcTGCGTGGCCTCTATCCGCAACCAGCAGCGGCACAACCACACCTGCCTGCGATTCTCAACTCGTGCCCAGGGCCCCGATGACATGCGGCCCAGCCCCTCCACCACCACTCACTACATCATGACCGTGCTGGGCTGCCTCTTCGGGATGCTTATCGTATTGGGCCTGGTCTATTACTGCCTGCGCAAGCGGCGGCTGcaggaagagaaggaaaagtCCATCAGTGTCAAGAAGACCATCCTGGAGATGCGCTACGGGCCCGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014891 True 2763 mRNA 0.65 3 38488619 38492954
TU92559 False 618 TUCP 0.61 1 38490323 38490940

Neighbor

gene id symbol gene type direction distance location
AMCG00014889 NA coding downstream 64778 38415402 ~ 38423841 (-)
AMCG00014888 cacng2,LOC103372897,LOC102214005,LOC101463732,LOC100710835,LOC108237679 coding downstream 85825 38363902 ~ 38402794 (-)
AMCG00014886 syngr1,syngr1a coding downstream 149256 38330131 ~ 38339363 (-)
AMCG00014885 NA coding downstream 171602 38303052 ~ 38317017 (-)
AMCG00014883 NA coding downstream 225135 38261530 ~ 38263484 (-)
AMCG00014894 gtpbp1,gtpb1,LOC106606809,LOC106601690 coding upstream 107467 38600421 ~ 38629200 (-)
AMCG00014895 NA coding upstream 183455 38676409 ~ 38688061 (-)
AMCG00014897 NA coding upstream 236035 38728989 ~ 38836352 (-)
AMCG00014902 NA coding upstream 645869 39138823 ~ 39176661 (-)
AMCG00014901 NA coding upstream 712093 39205047 ~ 39217098 (-)
G74128 NA non-coding downstream 140 38488262 ~ 38488479 (-)
G74093 NA non-coding downstream 148403 38309085 ~ 38340216 (-)
G74052 NA non-coding downstream 205102 38281437 ~ 38283517 (-)
G74030 LOC106607450,LOC105029658,LOC103393291,LOC102224681,LOC103147375,LOC101072687 non-coding downstream 308021 38177974 ~ 38180598 (-)
G73980 NA non-coding downstream 417002 38063347 ~ 38071617 (-)
G74137 NA non-coding upstream 13238 38506192 ~ 38575968 (-)
G74167 NA non-coding upstream 155968 38648922 ~ 38649290 (-)
G74174 NA non-coding upstream 169184 38662138 ~ 38662455 (-)
G74206 NA non-coding upstream 229650 38722604 ~ 38750977 (-)
G74221 NA non-coding upstream 282750 38775704 ~ 38776755 (-)
G74115 NA other downstream 55744 38432263 ~ 38432875 (-)
G74107 NA other downstream 75388 38412160 ~ 38413231 (-)
G74087 NA other downstream 138328 38343322 ~ 38350291 (-)
AMCG00014865 NA other downstream 624136 37802094 ~ 37864483 (-)
G73916 NA other downstream 705044 37779333 ~ 37783575 (-)
G74160 NA other upstream 104414 38597368 ~ 38644538 (-)
G74247 LOC100136012,LOC107575789 other upstream 405141 38898095 ~ 38920353 (-)
G74375 myh9,LOC100380669 other upstream 765108 39258062 ~ 39260360 (-)
AMCG00014906 NA other upstream 885221 39378175 ~ 39379153 (-)
AMCG00014914 ankrd54,LOC107563363,LOC107728844,LOC107559232,LOC107670919,LOC107719341 other upstream 1097542 39590496 ~ 39591658 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026508 ELFN2 coding NC_007114.7 CM002887.2 33570583 ~ 33574576 (-)