AMCG00014909 (ankrd54)


Basic Information

Item Value
gene id AMCG00014909
gene name ankrd54
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39584038 ~ 39588507 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014909
ATGACACGAGCATTCGAATGTCACTACCAGCTTTCCACAGGGTCCAAACTGAACATCCTGCAGGAGGGAGAGTCCACCAGCCTGGTGACGCTGCGGGGCGAGGTCACTCAGATTATTCAGATGCTGCGGGAGTACCTGAGCCGTGTGGGGCAGCAGGAGCAGAGGGACAGACTGGAGCAGATCTGCACACAGCTGCAGCACACCAGCACCAAGGCTCAGgtggaTGAGGTGACAGATCTGCTGGCCAGCTTCACCTCCCTGAGTCTACAGATGCACGGCCTGGGGGAGAGGTAG
>TU92921
gtgagtgagtgagggagatactgagagagagagtgtgagtgagtgagggagataatgagagagagagtgactgagtgagggagggagatactgagagagagagagagtgagtgagggagatactgagagagagagtgtgagtgagtgagggagatactgagagagagagtgagtgagtgagggagatactgagagagagagtgactgagtgagggagggagatacTGATACTGAGagtgagagatagaaagagtgagggagggatagagacactgagagagacagacagacggatgGGGTGTTGGTGTTTTTGTGACAGGCGCCCGTGTGGATGCCCTGGACCGTGCTGGGAGGACCCCTCTGCACCTGGCCAGGTCCAAACTGAACATCCTGCAGGAGGGAGAGTCCACCAGCCTGGTGACGCTGCGGGGCGAGGTCACTCAGATTATTCAGATGCTGCGGGAGTACCTGAGCCGTGTGGGGCAGCAGGAGCAGAGGGACAGACTGGAGCAGATCTGCACACAGCTGCAGCACACCAGCACCAAGGCTCAGgtggaTGAGGTGACAGATCTGCTGGCCAGCTTCACCTCCCTGAGTCTACAGATGCACGGCCTGGGGGAGAGGTAGAGGCAGAGGGAAGACATGGGAGATGAAGCGAGGGGGCGGGAGAGACCAAAAGGTTTCGAATGATGTAACCCAGGATTGAGGGAGAGATGCAGAGGTACAGAaagggatgagaaggaggaggagacggagagaCGGAATGGCCGCTCCTCTCCTTCCATGTACATACTGTGTGGCTGTGATGTCATGAGCTGCCTGTTAACTTAATAAACCCAACCAATCACAGAGCCC

Function

symbol description
ankrd54 Predicted to be located in cytoplasm; midbody; and nucleus. Orthologous to human ANKRD54 (ankyrin repeat domain 54).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 54

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014909 False 294 mRNA 0.59 4 39584038 39588279
TU92921 True 855 lncRNA 0.55 3 39587413 39588507

Neighbor

gene id symbol gene type direction distance location
AMCG00014907 hmgxb4,LOC106607053,LOC106601319 coding upstream 8450 39565733 ~ 39575588 (+)
AMCG00014908 NA coding upstream 54227 39511772 ~ 39529811 (+)
AMCG00014904 ttc26,LOC106607033 coding upstream 194351 39381101 ~ 39389687 (+)
AMCG00014900 myh9,myh9b,LOC107672897,LOC107745511,LOC107751969,LOC107572814 coding upstream 323761 39237624 ~ 39260277 (+)
AMCG00014899 NA coding upstream 351033 39227927 ~ 39233005 (+)
AMCG00014912 gcat coding downstream 34919 39623426 ~ 39626200 (+)
AMCG00014911 mcm5,LOC106607002 coding downstream 42183 39630690 ~ 39636561 (+)
AMCG00014919 NA coding downstream 118554 39707061 ~ 39707433 (+)
AMCG00014918 NA coding downstream 119027 39707534 ~ 39707752 (+)
AMCG00014922 NA coding downstream 243961 39832468 ~ 39846425 (+)
G74422 NA non-coding upstream 84378 39498703 ~ 39499660 (+)
G74363 NA non-coding upstream 102331 39476816 ~ 39481707 (+)
G74338 NA non-coding upstream 278064 39305580 ~ 39305974 (+)
G74333 NA non-coding upstream 298234 39285294 ~ 39285804 (+)
G74330 NA non-coding upstream 304070 39279236 ~ 39279968 (+)
G74459 NA non-coding downstream 13345 39601852 ~ 39602098 (+)
G74484 NA non-coding downstream 59322 39647829 ~ 39659512 (+)
G74491 NA non-coding downstream 71026 39659533 ~ 39659958 (+)
G74486 NA non-coding downstream 93748 39682255 ~ 39722288 (+)
G74505 NA non-coding downstream 137959 39726466 ~ 39734537 (+)
G74348 NA other upstream 108219 39336268 ~ 39475819 (+)
G74227 NA other upstream 772910 38810693 ~ 38811128 (+)
G74114 NA other upstream 1151177 38432374 ~ 38432861 (+)
G73850 NA other upstream 2065632 37518108 ~ 37518406 (+)
AMCG00014836 NA other upstream 4171451 35390634 ~ 35412587 (+)
AMCG00014913 NA other downstream 18380 39606887 ~ 39621186 (+)
AMCG00014923 NA other downstream 276575 39865082 ~ 39875428 (+)
AMCG00014925 NA other downstream 362681 39951188 ~ 39953278 (+)
AMCG00014928 NA other downstream 375261 39963768 ~ 39973070 (+)
G74642 NA other downstream 571394 40159901 ~ 40160578 (+)

Expression


Co-expression Network