AMCG00014914 (ankrd54,LOC107563363,LOC107728844,LOC107559232,LOC107670919,LOC107719341)


Basic Information

Item Value
gene id AMCG00014914
gene name ankrd54,LOC107563363,LOC107728844,LOC107559232,LOC107670919,LOC107719341
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39590496 ~ 39591658 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014914
ATGGAGGGCTGGAGCCCCGTGGTGCTGTCGGACGAGGAGCGCTCCAGCTCGGAGGGGGAGTACGCGGTCCAGCCCGGGAAGGAGCCGCGGCACAGCGGGGCGGAGGCGGCGGGGTTCGGGCTGGCGGGGCTGGGCGAGGGGGTGCGGCTCGGCGGCGCCGCCGGCAGCTCGGACGAAGACCCGGGGCTGCGGTACCTGCACCTGCTGTGGGACCCGGACCGCGCCGGCGCCGCCAGCGAGCCCCCCAGTCCGCGCAGGCCGGGGAAGGTGTCGGGGAGCCGGGCGAGGAGGCTCGGCAGGGCGCAGCGCAGTGCGGGGCCGCTGGGCAGGGAGCTGCACGcgGCCAAGAGGCTGAGAGAGGCAGCCAACGGGAACGACATTGACACAGTGCGGCGGCTCCTGGAGGAGGACACTGATGCCTGCGCCGCCGACGACAAGGGCAGGACCGCCCTGCACTTCGCCTCCTGTAATGGCAACAAGGACATCGTGCAGCTGCTGCTGAGCTGCGGCGCCGACCCCAATCAGAGAGACGGGCTGGGGAACACGCCGCTGCACCTGGcgGCCTGTACCAACCACGTCCCTGTCATCACTACACTCCTCAGAGGAGGTGAGTGA
>TU92952
GCAGGCCGGGGAAGGTGTCGGGGAGCCGGGCGAGGAGGCTCGGCAGGGCGCAGCGCAGTGCGGGGCCGCTGGGCAGGGAGCTGCACGcgGCCAAGAGGCTGAGAGAGGCAGCCAACGGGAACGACATTGACACAGTGCGGCGGCTCCTGGAGGAGGACACTGATGCCTGCGCCGCCGACGACAAGGGCAGGACCGCCCTGCACTTCGCCTCCTGTAATGGCAACAAGGACATCGTGCAGCTGCTGCTGAGCTGCGGCGCCGACCCCAATCAGAGAGACGGGCTGGGGAACACGCCGCTGCACCTGGcgGCCTGTACCAACCACGTCCCTGTCATCACTACACTCCTCAGAGGAGGTGAGTGAGGGGGGtatgggaagagagagagagagtgagtgagtaagagaaagagagagagagagagaga

Function

symbol description
ankrd54 Predicted to be located in cytoplasm; midbody; and nucleus. Orthologous to human ANKRD54 (ankyrin repeat domain 54).

GO: NA

KEGG:

id description
K21442 ANKRD54; ankyrin repeat domain-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014914 True 615 mRNA 0.72 5 39590558 39591658
TU92952 False 424 lncRNA 0.65 5 39590496 39591405

Neighbor

gene id symbol gene type direction distance location
AMCG00014910 NA coding downstream 53653 39531326 ~ 39536843 (-)
AMCG00014905 NA coding downstream 305149 39282154 ~ 39285347 (-)
AMCG00014903 NA coding downstream 320252 39263141 ~ 39270244 (-)
AMCG00014901 NA coding downstream 373398 39205047 ~ 39217098 (-)
AMCG00014902 NA coding downstream 413835 39138823 ~ 39176661 (-)
AMCG00014915 NA coding upstream 956 39592614 ~ 39599496 (-)
AMCG00014917 NA coding upstream 48753 39640411 ~ 39641256 (-)
AMCG00014916 NA coding upstream 57146 39648804 ~ 39657562 (-)
AMCG00014920 si:ch211-241c24.3,si:ch211-241c24.4,LOC107745955,LOC107553807 coding upstream 170912 39762570 ~ 39764640 (-)
AMCG00014924 NA coding upstream 228905 39820563 ~ 39822089 (-)
G74446 NA non-coding downstream 19090 39570678 ~ 39571406 (-)
G74427 NA non-coding downstream 90819 39498703 ~ 39499677 (-)
G74414 NA non-coding downstream 113392 39463079 ~ 39477104 (-)
G74413 NA non-coding downstream 136533 39453653 ~ 39453963 (-)
G74395 NA non-coding downstream 189267 39338330 ~ 39401229 (-)
G74469 NA non-coding upstream 31696 39623354 ~ 39624793 (-)
G74501 NA non-coding upstream 107905 39699563 ~ 39702594 (-)
G74510 NA non-coding upstream 144386 39736044 ~ 39736401 (-)
G74512 NA non-coding upstream 152470 39744128 ~ 39744359 (-)
G74515 NA non-coding upstream 162037 39753695 ~ 39753938 (-)
AMCG00014906 NA other downstream 211343 39378175 ~ 39379153 (-)
G74375 myh9,LOC100380669 other downstream 330136 39258062 ~ 39260360 (-)
G74247 LOC100136012,LOC107575789 other downstream 670143 38898095 ~ 38920353 (-)
G74160 NA other downstream 945958 38597368 ~ 38644538 (-)
AMCG00014891 NA other downstream 1097542 38488619 ~ 38492954 (-)
G74477 NA other upstream 46241 39637899 ~ 39638957 (-)
G74569 NA other upstream 309812 39901470 ~ 39983396 (-)
G74593 NA other upstream 343235 39934893 ~ 40012081 (-)
G74591 NA other upstream 353072 39944730 ~ 39951070 (-)
AMCG00014938 NA other upstream 643400 40235058 ~ 40268485 (-)

Expression


Co-expression Network