AMCG00014921 (wbp11)


Basic Information

Item Value
gene id AMCG00014921
gene name wbp11
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39876200 ~ 39887566 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014921
CGCTGTCTCATGTCTATGGTCGCTTCAGGAGGCAGCGGAAGTGGCCCGCTGTTGTGTTTCCGGTGCTGGCGATTCAAGATGGCGGGCCGCGGCGTTGAGGACACGGCACCGTCGAGCGAgtaaacagagagaaagagaccgCGATACAGACAGCGCTCATCTGACAGGGCTTAGCGCTGGTCTCCTGCAGCGGCGGGCGGAGTgaaggggagagacagagatacaggcggagctgcagggagagagagagggagtgataGTCCCCGATTTTCATTTCACGTGCAAGGGTGACCCGAGAACAGCGCAACTATGGGGCGCCGGTCGACCTCCTCCACCAAGAGTGGCAAGTTCATGAACCCCACGGACCAGGCCCGCAAGGAGGCGCGCAAGAGGGAGCTGAAGAAGAACAAGAAGCAGAGGATGATGGTGAGGGCAGCAGTGCTGAAGATGAAGGATCCCAGACAGATCATCAGAGACATGGAGAAACTGGACGAGATGGagtttAACCCGGTGCAGGTGCCTCTGCTCAACGAGAAGGTGCTGAGGGACAAGAGGAAGAAGCTGCGTGAGACGTTTGAGCGCATCGTGCGTCTGTACGAGCGCGAGAGCCCCGACACACACCGCGAGTTGCGCCGCCTGGAGGCCGAGTACGAGAGCCGCAGGGGCCAGCTGGCTCTGTACTTCGACTCGGTCAAGAATGCAGAGTTGGTGGAAGTGGACAGCATCCCACTGCCCGACCTGCCCCACGCCCCCTCCAGCATCCTGATTCAGGACATCCCCCTGCCCGGGGCCCAGCCACCCTCCATCCTGAAGAAGACCTCCGCCTACAGtaaGGGGTTATTGCCGGGACAGACTGCAATACAGGGGGTCCCCAGGTTGCCCCCCGGTCGCAAGCCCCCTGGACCCCCCCCCGGACCACCGCCTCCTCAGCTGCTGCAGCTGTACGCCCGACGGGCTGCTCTGCCCCCCGCCCCCTACAGGAGGGAGGAGGACACGGCGGTTTATGACCCTGAGACAGGCGCCCACGAGCACCTGGACGGTGAGGTCGCCATGGACATGGGCAGGCGTGGAGGGGGCAGCCAGAGCGACTCGGACGGAGAGGGGGATGAGGAGGAcgacgaggaagaggaggaggaggacgacaGCGAGGACGAGGACGACGAGGATGACGGCAGGGAGGAGGGGGCGGAGGAGGAGCGGATGAAGGAGGCGCGGCccgaggaggagagagagagggagcgtgagaggcagagggaggagGACAGGGAGCGGGAGGGAGTCATGGACAGGCAGACAGGGCGCAGTGTGCGGTTTGCGGATGAGAAACCGcgcagggagaggaggaggaggctggTGAAGAAGAGCAAGACTATCACCCCCCTGCAGGCCATGATGCTCAGGATGGCAGgtgcCCCCCCGTTCCTGCGCCCCCCAGGCATGCCGGGGATGAGGGGGCCTTTGCCGCGGTTACTGCCCCCAGGACCTCCCCCAGGCCGCCCACCAGGCCCCCCGCCAGGGCCCCCCCCGGGCCTGCCACCGGGCCCCCCCCCTCGAGGCCCCCCACCCAGACTGCCTCCCCCAGCTCCCCCAGGCATGCCCCCCCCGCCTCCCCGCCCGGGACTGTCCCGCCCATTGGGACCCCCCCTCTCCATGTTCCCCCCTCCCCTCAACCCCAACGTGCTCAGCGCCCCGCCCAGCCTTATCCAGCGGCAGAAGGCCAACGAGGGACCCCCCCCTGGCAGCAACAACCCCGGGGCCCCCAACCCGGGGCCCCTGCACCCACCGCCCCCGGCACTGCCCCTCTCCCTGCGCGGAGGCGGGGGAGTGGGGGTCATGCAGATGCCCCCCCCTCCCGGCACGGCCACCGGGGGGCCCCAGCCACCtctgccacccccccaccacgcCCCCACCATCGAGAAGAGGGCCAGCCTGACCGCCGGCGGGGGGGGTAGCGGCAGTTCTGCGCTGGGcggtggaggggtgggggggggcgtAGGAGCTGCAGGGGCAGGAGGAGGCGCCACGATCTCGGCCAAACCACAGATCACCAACCCCAAGGCGGAGATCACGCGCTTCGTGCCCACGGCCCTCAGGGTGCGGCGGGAGCGGCAGGGGCCGGAGCGGGGCGGTGCGGCCGGGGGCAGGAGGGTCGGGGAGGGGGACGGGcagaagaagcagcagcagctccacagGGCTGGTGtcgcagtggggggggggggctcctcctcctcctctgtggcAGGGGGGTCGCAAGCGGCCGTGCAGACTAAGGACCAGGTGTACGAGGCCTtcatgagagagatggaggggctGCTgtag

Function

symbol description
wbp11 Predicted to be involved in mRNA cis splicing, via spliceosome. Predicted to act upstream of or within RNA splicing; mRNA processing; and rRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of spliceosomal complex. Orthologous to human WBP11 (WW domain binding protein 11).

NR:

description
PREDICTED: WW domain-binding protein 11 isoform X2

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12866 WBP11, NPWBP; WW domain-binding protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014921 True 2319 mRNA 0.68 10 39876200 39887566

Neighbor

gene id symbol gene type direction distance location
AMCG00014922 NA coding upstream 29775 39832468 ~ 39846425 (+)
AMCG00014918 NA coding upstream 168448 39707534 ~ 39707752 (+)
AMCG00014919 NA coding upstream 168767 39707061 ~ 39707433 (+)
AMCG00014911 mcm5,LOC106607002 coding upstream 239639 39630690 ~ 39636561 (+)
AMCG00014912 gcat coding upstream 250000 39623426 ~ 39626200 (+)
AMCG00014926 LOC106607097,LOC107574926 coding downstream 534 39888100 ~ 39899640 (+)
AMCG00014929 NA coding downstream 97739 39985305 ~ 39990486 (+)
AMCG00014931 NA coding downstream 226562 40114128 ~ 40140409 (+)
AMCG00014932 NA coding downstream 259857 40147423 ~ 40151507 (+)
AMCG00014936 NA coding downstream 301143 40188709 ~ 40206799 (+)
G74521 NA non-coding upstream 35582 39796112 ~ 39840618 (+)
G74516 NA non-coding upstream 120536 39755390 ~ 39755664 (+)
G74513 NA non-coding upstream 123649 39752197 ~ 39752551 (+)
G74511 NA non-coding upstream 131840 39744125 ~ 39744360 (+)
G74505 NA non-coding upstream 141663 39726466 ~ 39734537 (+)
G74557 NA non-coding downstream 99936 39987502 ~ 40006654 (+)
G74615 NA non-coding downstream 214327 40101893 ~ 40138259 (+)
G74647 NA non-coding downstream 344051 40231617 ~ 40231881 (+)
G74649 NA non-coding downstream 345208 40232774 ~ 40233420 (+)
G74656 NA non-coding downstream 397335 40284901 ~ 40286138 (+)
AMCG00014923 NA other upstream 772 39865082 ~ 39875428 (+)
AMCG00014913 NA other upstream 255014 39606887 ~ 39621186 (+)
AMCG00014909 ankrd54 other upstream 287693 39584038 ~ 39588507 (+)
G74348 NA other upstream 400381 39336268 ~ 39475819 (+)
G74227 NA other upstream 1065072 38810693 ~ 38811128 (+)
AMCG00014925 NA other downstream 63622 39951188 ~ 39953278 (+)
AMCG00014928 NA other downstream 76202 39963768 ~ 39973070 (+)
G74642 NA other downstream 272335 40159901 ~ 40160578 (+)
G74643 NA other downstream 274450 40162016 ~ 40163997 (+)
AMCG00014942 NA other downstream 444421 40331987 ~ 40373870 (+)

Expression


Co-expression Network