AMCG00014926 (LOC106607097,LOC107574926)


Basic Information

Item Value
gene id AMCG00014926
gene name LOC106607097,LOC107574926
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39888100 ~ 39899640 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014926
AACAAGCATGGCGGACGAGCCGGACAGAGAACCAGAGAGCGCTGGAGAGGCAGAGGAAGAGGCAGAGATGGAGAACGAGAGACAGGGCGACGAGGACggaggagagcaggagcccGACACGCCGAGGAGCTTCAAGGACCTGggggtGACAGAGGTGCTCTGTGAGGCCTGTGAGCAGCTGGGCTGGAAGAATCCCACCAAGATCCAGGTGGAGGCCATTCCTGTGGCCCTggaggggcGTGACATCATTGGGCTGGCAGAGACGGGCTCAGGCAAGACGGGGGCGTTCGCCCTGCCCATCCTGCAGTCGCTGCTCTCCTCCGCCCAGCGGCTGCACTCCCTCGTTCTCACGCCCACCCGTGAGCTCGCCTTCCAGATCGCAGAGCAGCTGGAGGCCCTGGGCTCCGCCATCGGGGTCAAGAcagcgGTGATCGTTGGGGGGATTGACATGATGTCACAGTCCCTGGCTCTGGCCAAGAAGCCGCACATCATCGTAGcCACCCCGGGCCGGCTGATCGACCACCTGGAGAACACAAAGGGCTTCACCCTCCGGGCCCTGCGCTGCCTGGTGATGGACGAGGCCGACCGCATCCTCAACATGGACTTCGAGACCGAGGTTGATAAGATACTGAAGCTGATTCCTCGAGACAGGCGGACCTACCTGTTCTCTGCCACCATGACCaagaagGTGCAAAAGCTGCAGAGAGCGGCGCTGAAGGACCCAGTGAAGTGCGCTGTGTCCACAAAGTACCACACAGTGGAAAAACTGCAGCAGTACTACATCTTCATACCCGCCAAGTACAAGGACTGTTACTTGGTGTCCATCATCAATGAACTGGCTGGGAACTCCTTCATGATTTTCTGTGGCACATGTCATGCAGCCCAGCGAGCTGCTCTGCTGCTCCGCAACCTGGGCCTCACCGCCATCCCCCTGCATGGGCAGATGAGCCAGgaCTATATCCACAGGGTGGGCCGGACAGCGAGAGCCGGGCGCTCCGGGAAATCCATCACCTTTGTCACACAGTATGACGTTGAGCTGTTTCAGCGAATCGAGCACCTGATCGGCAAGAAGCTGCCTGCCTTCCCCACGCAGGAAGAGGAAGTGATGATGCTGGTGGAGAGAGTGAGCGAGGCGCAGCGCTTCGCCCGGATAAAGGCCAGCTTTCCCAATGACTGGAGAAACTGCAGCAGCACAATTGTGAGGTACAGCATCGACCAGGCCTCCACTGTGGCTGCGCTGAAGCCTTGTCTCGACGCCCCTGCCTGGAGGCGAACTGCTTGCATTGCCACCGGAGGGAGGAGAAAGACAGACGGGTCTGTACGGTTAGGGTCACAAGGGAGACAGCAGAGCAGCCACCGGAGGAGTGGACAAGTGAGCAACTGA

Function

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX47

GO: NA

KEGG:

id description
K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014926 True 1384 mRNA 0.60 11 39888100 39899640

Neighbor

gene id symbol gene type direction distance location
AMCG00014921 wbp11 coding upstream 534 39876200 ~ 39887566 (+)
AMCG00014922 NA coding upstream 41675 39832468 ~ 39846425 (+)
AMCG00014918 NA coding upstream 180348 39707534 ~ 39707752 (+)
AMCG00014919 NA coding upstream 180667 39707061 ~ 39707433 (+)
AMCG00014911 mcm5,LOC106607002 coding upstream 251539 39630690 ~ 39636561 (+)
AMCG00014929 NA coding downstream 85665 39985305 ~ 39990486 (+)
AMCG00014931 NA coding downstream 214488 40114128 ~ 40140409 (+)
AMCG00014932 NA coding downstream 247783 40147423 ~ 40151507 (+)
AMCG00014936 NA coding downstream 289069 40188709 ~ 40206799 (+)
AMCG00014939 NA coding downstream 311188 40210828 ~ 40211397 (+)
G74521 NA non-coding upstream 47482 39796112 ~ 39840618 (+)
G74516 NA non-coding upstream 132436 39755390 ~ 39755664 (+)
G74513 NA non-coding upstream 135549 39752197 ~ 39752551 (+)
G74511 NA non-coding upstream 143740 39744125 ~ 39744360 (+)
G74505 NA non-coding upstream 153563 39726466 ~ 39734537 (+)
G74557 NA non-coding downstream 87862 39987502 ~ 40006654 (+)
G74615 NA non-coding downstream 202253 40101893 ~ 40138259 (+)
G74647 NA non-coding downstream 331977 40231617 ~ 40231881 (+)
G74649 NA non-coding downstream 333134 40232774 ~ 40233420 (+)
G74656 NA non-coding downstream 385261 40284901 ~ 40286138 (+)
AMCG00014923 NA other upstream 12672 39865082 ~ 39875428 (+)
AMCG00014913 NA other upstream 266914 39606887 ~ 39621186 (+)
AMCG00014909 ankrd54 other upstream 299593 39584038 ~ 39588507 (+)
G74348 NA other upstream 412281 39336268 ~ 39475819 (+)
G74227 NA other upstream 1076972 38810693 ~ 38811128 (+)
AMCG00014925 NA other downstream 51548 39951188 ~ 39953278 (+)
AMCG00014928 NA other downstream 64128 39963768 ~ 39973070 (+)
G74642 NA other downstream 260261 40159901 ~ 40160578 (+)
G74643 NA other downstream 262376 40162016 ~ 40163997 (+)
AMCG00014942 NA other downstream 432347 40331987 ~ 40373870 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025950 ddx47 coding NC_007114.7 CM002887.2 1378098 ~ 1387292 (-)
grasscarp (Ctenopharyngodon idella) G154415 NA misc CI01000029 null 4986108 ~ 4990990 (-)