AMCG00014938


Basic Information

Item Value
gene id AMCG00014938
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40235058 ~ 40268485 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014938
ggATTCCAAACACAGCTGTGCAACATGTCTGTCTGTTACTACTGCTGCTCGGCCCCCGCAGCCCATTCCCACGCACACTGCCCCTCCCACTGCCCCCTCCCAGCGCCCGCACGCACCCCGCGGCCGCCCCCTCCCAGCCCGCCTTCCTCCTTCCCGCTCTCCCTCCTCACAGCCTccccgtcctcctcctcctcctcctcccctctcctcttcctcttcctcctgctcttcctgCTGCTCCCCTTCCCTTTCCCAGCGCGGGCGTCTGCGTCCTCGGCGTCCTCGGCGTCGTCTGCGTCCTCCGCATCCTCCGCCTTCTCCTCGGCGTCCGCGTCGGCCTCCATGCTGGGCGTGGCGGCGAAACAGCACCAGTACCCGCCGTACCCCCAGTACCCCCACAGCCTGCCCAAGCTTTCCCAGGGCCTGAGCATCGCCGTCATCCTGGTGGGCAACTCCAGTGACGTCAGCCTGGACGAGGGCCGTGACAAGGAGGACTTCCAGTACATGGCGGTCAGCCCCAGCGTGGAGCTGGTCACCATGAACGAGACCGACCCCAAGAGCATCATCACGCGCATCTGCGACCTCATGACCCGCAACTGGCTGCAGGGCGTCGTCTTCGGGGACGACACCGACCAGGAGGCCATCGCCCAGATCTTGGACTTCATCTCGGCCCAGACGCACATCCCAATCCTGGGCATCCGCGGGGGCTCGTCCATGATCATGGCGGCCAAGTTTGGCCCCTCTATAGAGCAGCAGGCCTCAGTAATGCTCAATATCATGGAAGAGTATGACTGGTACATCTTCTCCATCGTCACCACCTACTACCCTGGGTACCAGGACTTTGTCAACAAGGTGCGCAGCACCATCGAGAACAGCTTTGTGGGctgggagctggaggaggtgcTGCTGCTGGACATGTCGCTGGACGACGGCGACTCGCGCATCCAGAACCAGCTGAAGAAGCTGCAGAGCCCAGTCATCCTGCTGTACTGCACCAAGGAGGAGGCCACCGACATCTTCGCCACTGCCCACTCCGTCGGCCTGACCGGCTACGGCTACACGTGGATCGCCCCCTCACTGGTGGCCGGCGACGCAGACAACGTGCCGTCCCAGTTCCCCACCGGGCTCATCTCGGTGTCCTACGACGAGTGGGACTACGGCCTGCAGGCTCGCGTGCGGGACGGGGTGGCAGTCATCGCCACGGCCACGTCCACCATGCTGCTGGACCGCGGACCCCACACCCTGCTGAAGGCCGAGTGCCACGGTGCCCCCGACAagaagggtggagggggaggaggaggagtcggaggaggagggggtggagggCTGGCGGGCGGAGGGGCCGGCCAGGGGAACCCCAATGAGCTGCTGAGGTACCTGATGAACGTGACGTTCGAGGGCCGAAACCTGTCCTTCAGTGAGGACGGCTATCAGATGCACCCCAAGCTGGTCATCATCCTGCTGGACAAGGACCGCCAGTGGGACCGGGTGGGTAAGTGGGAGAATGGCTCACTGGCGATGAAGTACCACGTGTGGCCGCGCTTCGAGCTATACGCCGAACCTGGCGAACGCGAGGATGACCACCTGTCCATTGTGACGCTGGAGGAGGCGCCCTTCGTCATCGTGGAGGACGTGGACCCCCTGAGCGGCACCTGCATGCGCAACACCACTGGGGACAGTGGCATCTACATCAAACGCTGCTGCAAAGGCTTCTGCATCGACATCCTCAAGAAGATCGCCAAATCGGTCAAGTTTACCTACGACCTCTACCTGGTGACCAATGGGAAGCACGGCAAGAAGATCAACGGGACCTGGAACGGCATGGTCGGCGaggtcatcgACTTCTCAGTGCCCTTCATCGAGACGGGCATCAGCGTCATGGTCTCCCGTAGCAACGGCACCGTGTCCCCCTCTGCCTTCTTGGAGCCCTTCAGTGCGGACGTGTGGGTGATGATGTTTGTGATGCTGCTCATCGTCTCGGCggtggctgtgtttgtgtttgagtaCTTCAGCCCCGTGGGCTACAACCGGTGCCTGGCGGACGGGCGAGAGCCGGGTGGTCCCTCCTTCACCATCGGAAAGGCGATCTGGCTGCTCTGGGGACTGGTGTTCAACAACTCTGTGCCGGTGCAGAACCCCAAGGGCACCACCAGCAAGATCATGGTCACAGAGCGCAACATCCGCAACAACTACCTGGAGATGCACACCTACATGGTCAAGTTCAACCAGCGCAACGTGGACGATGCGCTGCATAGCCTGAAGACAGGGAAGCTGGACGCATTCATCTACGACGCGGCGGTGCTCAACTACATGGCCGGGCGGGACGAGGGCTGCAAGCTGGTGACCATCGGCTCTGGGAAGGTGTTCGCCTCCACCGGGTACGGCATCGCCATCCAGAAGGACTCGGGCTGGAAGCGCGCAAACGAGGTGATGAGCTCCCAGCTGGACATCGACAACATGGCGGGCGTGTTCTACATGCTGGGGGCAGCCATGGCGCTCAGCCTCATCACCTTCATCTGCGAGCATCTCTTCTACTGGCAGCTGCGCCACTGCTTCATGGGCGTCTGCTCGGGCAAGCCGGGCATGGTCTTCTCCATCAGCAGGGGCATCTACAGCTGCATCCACGGGGTGCAGATTGAGGAGAACAAGTCTGGGATGAACTCGCCCTCGGCCACCATGAACAACACGCACTCCAACATCCTACGGCTGCTGCGCACGGCCAAGACCATGGCCAGCCTGTCGGGGGTGAACGGCTCTCCCCATAGCGCGCTGGACTTCATCCGCCGCGAGTCGTCCGTGTACGACATCGCTGAGCACCGCCGCAGCTTCGGAGGGGTGGGCCCCCACGCAGACTGCGGCAAGCCCCCGTACCCTGGTGGCGGTGGGCCCCCCCCGGCCCTGCCcatgcccctgcccctgccccctgAGGACAACCTGTTCTCGGATTACATCAGCGAGGTGGAGCGCACCTTCGGCAACCTGGGGCTGAAGGAGAGCAACCTGTACCAGGACCACTACCTGCACCACCACCACGCGCCACCGGGGGGCCTGGGCGGACCTCCGTCCGGCCGGCCCCATAGCCTGGGCAGTGGCAGCTCCCTGGAGGGGCCCCTGTATGACTGCGACAGCCTGGGGGGCggaggagggggcgggggcgggggaggTGGAGGCGGAGTGACGCCGATTTTCAGCACCCAGCCGCGCGGCTCCTTCAGCTCCCACCGGGGCGGCAACAAGTTCGACCTGGTGGCCGGGCTGGGGCAGGGCGGGCAAGGGGGGGGTGGGCAGGGCTTCAAGCAGGGCCTGGCGGATCTGTACGGCAAATTCTCCTTCAAGGGCGGCAGCTCGGGGTTCATCGGTGGGGCCCACGACCGGTACtgcgggggcggggggggcgggggcgaCGACGGCAACATCCGCTCAGACGTGTCGGATATCTCCACGCACACAGTCACCTACGGCAACCTGGAGGGCAACGCCAAGCGGCGCAAGCAGTACCGCGACTCGCTGAAGAAGCGGCCGGCCTCAGCCAAGAGCCGCCGCGAGCTGGACGAGATCGAGCTGGGCATGAGACGCCGGCCACACTCCTCCCACACGCACCACAGCCACGCCCACTCCCACAGCCACGCACACATGCGCTCCGTCTCCCCGCCACTGCTGCCcctggagaggaagagaggcgggggcgggggcggggcgTCCTATTTCGTGCGGGATAAGGAGGGCCTGAGGGATTTTTACCTGGATCAGTTCCGGCCCAAGGAGGGGGTGCCCCAGTGGGAGCACGTGGATTTGACTGATGGGCCCGGGGTGGGGGTGGGCGGGGGCAACAGCAGCAGTCTGGTCCCGGTGGAGGATTTCCTCAAAGGCAAAAAGAAGACAGACTCCAAATCGGGGGTAGGGGCAGGGCAGCAGGGAACGTGCTGGGAAAAGAACTCCGTGGGCCTGGCAGGGGGTGAGTGGGAGTGTCGCAACTGCCCCGGGGGCAAGCAGGGAGGGTACGCTGGAGGGGGCTGTGGGAACCCAAGCGGGGCCAACAGCCGGCCCAGCTCCGCCTCCTGTCACTCGTACGACACCTTCGTGGACCTGCAGAAGGACgacctgccccccccccgcaGCATCAGCCTCAAGGACAAGGATCGCTTCCTGGAGGGCACCAGCCCCTACGCACACATCTTCGAGAGACATGCCCACAGCGGCGGCGGAGGGGGCGGCGGCGGAGGGGGCGGTGGCGGGGGAGGGGTCTCCGGCTCTGATCCCTTCTTCTTTGGGGCCGGGGGGAAGCCAGCCTCCTCCTTCGGGGGCGGGGGAGGGCTGTTccgaggagggggaggggagctgCATCGGAGATctgtaggaggaggaggaggaggaggagggggtggagggggaggcGGCATGATGGGGGGAGTAGATAGAGGGATGGGGATGATGGGAGGAGGGGGAAGAGGGGCAGGGAGCGGCTACTCCCTCAGCAAGTCCCTGTACCCCGACCGCGTCAACCACAACCCCTTCATCCCCACCTTCGGGGACGACCAGTGCCTGCTGCACGGCGCGCAGTCCCACTACTTCAAGAAGCCGCAGCCTGCGCCACAGCCGCCTGCCTTCCTCAAGGGAGTGCGGCCGGACCTCAGGGGCTCGGCCATCCTGGGGGTCACCTCCTTCCTCCCGGCCAGCGCGGCCGCGGGGGTCCTGTCCAGTGTGGCGCTGGGCGGGGGCggcgggggtggggtggggggcggcGTGGTCTCCATGGGCAACCACCACCCCGGGGGCCCCAACAGCCACAAGCTGATGGCTGCTGCCGCCTCCCACCGGCCGTTCAATGGGTCCAGCAATGGCCACGTGTATGAGAAGCTGTCCAGCATCGAGTCTGATGTgtag
>TU93302
aCGACGGCAACATCCGCTCAGACGTGTCGGATATCTCCACGCACACAGTCACCTACGGCAACCTGGAGGGCAACGCCAAGCGGCGCAAGCAGTACCGCGACTCGCTGAAGAAGCGGCCGGCCTCAGCCAAGAGCCGCCGCGAGCTGGACGAGATCGAGCTGGGCATGAGACGCCGGCCACACTCCTCCCACACGCACCACAGCCACGCCCACTCCCACAGCCACGCACACATGCGCTCCGTCTCCCCGCCACTGCTGCCcctggagaggaagagaggcgggggcgggggcggggcgTCCTATTTCGTGCGGGATAAGGAGGGCCTGAGGGATTTTTACCTGGATCAGTTCCGGCCCAAGGAGGGGGTGCCCCAGTGGGAGCACGTGGATTTGAC

Function

GO: NA

KEGG:

id description
K05210 GRIN2B; glutamate receptor ionotropic, NMDA 2B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014938 True 4884 mRNA 0.65 15 40235058 40268485
TU93302 False 394 TUCP 0.66 1 40236402 40236795

Neighbor

gene id symbol gene type direction distance location
AMCG00014934 NA coding downstream 70478 40162386 ~ 40164580 (-)
AMCG00014933 NA coding downstream 74709 40153419 ~ 40160349 (-)
AMCG00014935 NA coding downstream 127393 40085776 ~ 40107665 (-)
AMCG00014930 NA coding downstream 195733 40029772 ~ 40039325 (-)
AMCG00014927 NA coding downstream 274062 39958825 ~ 39960996 (-)
AMCG00014945 LOC107382204 coding upstream 40402 40308887 ~ 40315938 (-)
AMCG00014944 sept3,LOC106952311 coding upstream 79737 40348222 ~ 40359702 (-)
AMCG00014952 NA coding upstream 126018 40394503 ~ 40398556 (-)
AMCG00014953 zgc:158803,LOC108258445,LOC105898746,LOC105916152,LOC105012183,LOC107700834 coding upstream 142389 40410874 ~ 40416728 (-)
AMCG00014950 naga,nagab,LOC102776695 coding upstream 160897 40429382 ~ 40431042 (-)
G74625 NA non-coding downstream 95957 40101893 ~ 40139101 (-)
G74633 NA non-coding downstream 105692 40128921 ~ 40129366 (-)
G74611 NA non-coding downstream 191768 40043007 ~ 40043290 (-)
G74597 NA non-coding downstream 229991 39962930 ~ 40005067 (-)
G74515 NA non-coding downstream 481120 39753695 ~ 39753938 (-)
G74725 NA non-coding upstream 28376 40296861 ~ 40299179 (-)
G74736 NA non-coding upstream 69579 40338064 ~ 40360225 (-)
G74738 NA non-coding upstream 97475 40365960 ~ 40368045 (-)
G74845 NA non-coding upstream 166955 40435440 ~ 40435670 (-)
G74854 NA non-coding upstream 377697 40646182 ~ 40646384 (-)
G74593 NA other downstream 222977 39934893 ~ 40012081 (-)
G74569 NA other downstream 251662 39901470 ~ 39983396 (-)
G74591 NA other downstream 283988 39944730 ~ 39951070 (-)
G74477 NA other downstream 596101 39637899 ~ 39638957 (-)
AMCG00014914 ankrd54,LOC107563363,LOC107728844,LOC107559232,LOC107670919,LOC107719341 other downstream 643400 39590496 ~ 39591658 (-)
AMCG00014946 NA other upstream 12709 40281194 ~ 40294526 (-)
G74726 NA other upstream 34746 40303231 ~ 40304085 (-)
AMCG00014951 poldip3 other upstream 133298 40401783 ~ 40410777 (-)
AMCG00014949 ndua6,ndufa6 other upstream 168774 40437259 ~ 40534709 (-)
G74862 NA other upstream 429368 40697853 ~ 40698276 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025947 GRIN2B coding NC_007114.7 CM002887.2 1303862 ~ 1317290 (-)
grasscarp (Ctenopharyngodon idella) CI01000214_00206864_00225874 GRIN2B, GRIN2BB coding CI01000214 null 206625 ~ 226914 (+)