AMCG00014942


Basic Information

Item Value
gene id AMCG00014942
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40331987 ~ 40373870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014942
ttcccagTGGTCCCAGTGCAGTTCTCCCAGTCCAGCACAGCGCAGCACTACCTGTATGTGAAGGAGCACCGGGTAAGGGCGGAAGGCAGCAGCAGCCGCCCGTTGGACCGCACGCTGTTCGTGCTCAACGTGCCACCCTACTGCTcggagcagtgtgtgtctgcGCTGTTCTCAGACTGTGGGGCTGTGGAGTCAGTTGAGCTGAGGGAGCGGCCCGGCCCACAGGAGCACACAGAACCAGAGCTGAGCCAGTACTTCAGAACACCCAGGAGAGAGggcttcAGTGTGGCCTATGTCGTGTTTAAGAAGGCTTCCTCTGTCGCTGCCGCCAAGAAGCTGAGTCCTGCCACGCCATTGGTCCTCTCCACTGAGCAGCAGCCAATCAGGACGGGGATtcagaGGGCGGACGGCGAGGGTTGGGTCAAGGTGTCCCGGCGCGGCCACACTGCCTCCCGCCCCCACAGCGAGCCGGCCAATCACAGAGCGCTGGAGcgggagaagaggaagagagcgAGGAAGGAGCTCATGAACTTCTACACCTGGCAGCACAGAGAGACGCAGAGGGAGCACATTGCCGAGCTGCGTAGGAAGTTTGAGGAGGACAAGCAGCGCATCGCCGTATTGAGAGCCCAGAGGAAATTCAGACCCTACTGACACCCTCCCCTCTGTTTCCACTACACCTCCTCTCCCTCGCTCCAGGACAGTTCACACCTCCACTTgtttatcagtttattttgtattttttcttttacaacaaaataaaaactcaacaGAAACACATCAG
>TU93241
agtcagtgttaatgtgctgtagtgtccagtcagtcagtcagtgttaatggactgtagtgtccagtcagtcagtcagtgttaatgtgctgtagtgtccagtcagtcagtcagtgttaatgtactgtagtgtccagtcagtcagtcagtgttaatgtgctgtagtgtccagtcagtcagtcagtgttaatggactgtagtgtccagtcagtcagtgttaatgtgctgtagtgtccagtcagtcagtcagtgttaatggactgtagtgtccagtcagtcagtgttaatgggctgtagtgtccagtcagtcagtcagtgttaatgggctgtagtgtccagtcagtcagtcagtgttaatgtgctgtagtgtccagtcagtcagtcagtgttaatggaatgtagtatgcatttaatttaatttcatcattattataaacCCAGAGGAAAATTTGTTTGCAGGCAAGTCTAAAATCAACaacacagtaataataataaacaaacaaacatacaatacaacaaatacGTGCAATATGCCAAATACAATCAAGTACAATAAATTACTGTCGTGCTTTACACATCACTTACTGTATTTGCATCAAAGCacagtttaaaatcaataacagTGCCCAGGTACTTATAGCTCTCAACATCCTCCACCACCTGTCTTtggtttttgttacatttaattgcaaGAAATCAGCATCACACCACTGTATAACAATGTCTTGCAACCAGTGTGGCAGCTGCATCCTCTACCCCCTCCTCGCCCTGTGAGCAAACTGTACTGGGTCCGAGAGATTCTGGGTTTTTGACAGTAGCTGCTCCTTCACCAGTTTCTCCAAGCGTTTCATGACTCGGGAAGTGAGGGCTACTGGCCTGCAGTCATTGAGGAttctttgttgtgttgtgtggccTGTTTCCATAGCATAGGCACCTTCTGCTGACCGAGGGATCTGTGGAAAATGTCACACAATATTGGTCCTAGTTGCTCAGAACAGGACCCGAGCAGAAAGCCACCATCTTGTCTGGCCCTGGAGATGTTTTTTACTTCACTATGCTTGAAAGTCTTAATCACACTGTCCTCATCAAGAAAGGTTATGGCCAGAGGCTGCAATTTGAGCCTTTAAaacttcagtttaatttgtaaaattgaaaacattaaacctgagatataattaattcaaaacatcCCTGGAGGCTCAGGGCTGAGGCATCAGACCAGGTTTTGACCCTCTTCATCAGTGTGCCCTCTCTTTGCAGTAGAGTGTGGTAGAATGGGATTAAGAGTACAGAGGTGTGGTCAGCTGACCCCTGGGGTGGGTTGGCGATGGACTTGTAGGCATTTTTGATAGATCAATAACAAAACCAAGATCTCATCGTGGGACAGGTGACATATTGATGGCAATTACACAAGGTTTTCTTCAGGGTGCAGTTATTGAAGTCCCTGAGGAATATATTTGGGGAGTCGGGGGAAATACTTTGTAGCTGACGTACCTCCCAACCAATTGCCTCTGTTGCGTTTGCCTCATTTGCCCTGGGATGGATGTATAACTTCCACCGTACAATACCAGATGTGTGTCTACACCAGCGCTCGCTGATGCAGAGATGCACAACCTCTTTGCCAGTCGTCCCAGCATGGCAATCCAGACGCCCTGAAGCCCTCGACGCTTAACTCTGTCTGTCAGCCAAGTCTCTGTGAGAGCCATGATGCAAGCGCCTCTGTAGGCCTGCAGTTCGTCCGTCTTATTCCAAAGGGATTGAACATTTGCCAGAATCATAGTGGGCAGAGGGACACAAGAGAGGCATACCTTCCTCAGCCCGTGTTTCCGGGTTTTTCTTAATTTAGCATCCGTACAATCATTCTGTCAACAGTTGGATTGTTCAACGGGGTTAAATCCACACAGTGTCTCTAGCCGTTTGATTGGTGCTGTTGGAGGAGAAATTCCCTGCTGTACTGGATTCTCAACATTTTTGTCTGGCAAAAAATAGTTGGTGAATCCATTGCTCAGTCACTTAAGTGTCTAATTCCCGTACACTGCCAATATCAGAAGATTGTTGTATAAGAACgccaacaaaaaagaaacttacGAAAAACAACGCTGGACAAATACACAGTTCACCCCTGCTGTAAATCGCCGCCCTAGtgtccagtctctctctctctctccctttcccagTGGTCCCAGTGCAGTTCTCCCAGTCCAGCACAGCGCAGCACTACCTGTATGTGAAGGAGCACCGGGTAAGGGCGGAAGGCAGCAGCAGCCGCCCGTTGGACCGCACGCTGTTCGTGCTCAACGTGCCACCCTACTGCTcggagtgtgtgtctgcGCTGTTCTCAGACTGTGGGGCTGTGGAGTCAGTTGAGCTGAGGGAGCGGCCCGGCCCACAGGAGCACACAGAACCAGAGCTGAGCCAGTACTTCAGAACACCCAGGAGAGAGggcttcAGTGTGGCCTATGTCGTGTTTAAGAAGGCTTCCTCTGTCGCTGCCGCCAAGAAGCTGAGTCCTGCCACGCCATTGGTCCTCTCCACTGAGCAGCAGCCAATCAGGACGGGGATtcagaaGTGGGCTGACCAGTACAGCGCCGCCCTGGTGGACACACGGCAGCTGCAGGCTGCAGTGGACGCCTACATGCTGGAGCACGACCGGAGGAAAGAGGAGGCGGCGCAGCGCGAGGCGGAGGCTGAAGGGGCGGACGGCGAGGGTTGGGTCAAGGTGTCCCGGCGCGGCCACACTGCCTCCCGCCCCCACAGCGAGCCGGCCAATCACAGAGCGCTGGAGcgggagaagaggaagagagcgAGGAAGGAGCTCATGAACTTCTACACCTGGCAGCACAGAGAGACGCAGAGGGAGCACATTGCCGAGCTGCGTAGGAAGTTTGAGGAGGACAAGCAGCGCATCGCCGTATTGAGAGCCCAGAGGAAATTCAGACCCTACTGACACCCTCCCCTCTGTTTCCACTACACCTCCTCTCCCTCGCTCCAGGACAGTTCACACCTCCACTTgtttatcagtttattttgtattttttcttttacaacaaaataaaaactcaacaGAAAC
>TU93243
gacattaacacactgacagacactcaCAAACTCACTGTGTTAAACGTGAGCAGTTAAATAAGATTTATAACTCAccccacactgacactcacacacacacattgaaatcacGAGAACCCGGCCTTAATGACTTCTTTGCaaatattctttatttcactGATACAAAAAGCACCCAATCTACGCAAATGCGAGTCTGTCTACACAACCCACAACTCAGTCCTCTCCCCTTGTGATTACAACACCAGGCAGccagacaaacagaaaatacaaaatacacaacaacGATAATGATGATAACAACACTGATAACCTCAATACATTTCccatataattaattacaattgttGCCCTGGTGACCAACAACACTGAACAGACAAGGGAAAATATGcgtgtggttttatttgttgattcgttcattattattattttatttatatatttatatgatatcttaaaatacacagaaaagcCAGACTGAACATCTACTAATATGATCAACTTGGACCATCCAGTTAGAATATGGAAGCGAAGAAGAAATATGGAGCTACCCCCCTacacccctccctctccctctccctctctctcgctctcgctctcactttctctctctctctgtgcctcacTCTGCCCcaccaaataaaaagtaaataagaaGTATTAAACCCACACAACAGACTGGGTACAGTTCCAGTAACAGGGGCCCACAAACATAAACCCAACCGGACACAGAGGAGACGTCTGTCGCTGAAACAACACAGTACTCTGTACAAGATctgcccctccctcccCCCGCTGAAGCGCAGGGCGGGGCCCGGGTCCACGGCAGTAACATTTCAGCTCATGGTTTAACTTTCAGAGTAAGGGTGTGTACGTTGGTTTACTTCTGCTATTAAAGACGCATCGTTGGGTTGTTTATCTGTAGCATGTGATATCCTAAACCCTATCTTTAAGATATTTCGTTTTGCagaataaagtttaaaatgttggcTGTGGTGCAGTCTGGgaaatatatgcaaattacattattacGCATTCTCTATAGGAGAGTCCATAAAAGAAGGGAACAttaaataaggtggtgtgaccGGGAAAAGACCATCTGAACAACAGGAAACATCTGGGGGAGGACCAATGTTTCTGACAGCAATCTtattccatgtgtgtgtgtgtgtggatactgcacattacagtatataaaacTAAGACGTTACTGCACGCTAATGCTGCACTGATCCAACTTCCCCAAATCATAAAAGCTCATCTGATTAATAATGTTGTTCTGTTTGCAGGAGTGAGTGGCAGCTTACACGACACAACTCCTTCCGAAATACAGACcgcaaaataaaatcaaagccTTCCTCAGATTAGAAATTCATCGTGCTGTATTGTTGTGGTGCGGTGTGGTGTGGTGCTGTATTGTTGTGGTGCGGTGTGGTGTGGTGCTGTATTGTTGTGGTGCGGTGTGGTGTGGTGCTGTATTGTTGTGGTGCGGTgcggtgtggtgtggtgtggtgctgTATtgttgtggtgtggtgtggtgtggtgctgTATTgttgtggtgcagtgtggtgtggtgcTGTATTGTTGTGGTGCGtgtgtgtctgcGCTGTTCTCAGACTGTGGGGCTGTGGAGTCAGTTGAGCTGAGGGAGCGGCCCGGCCCACAGGAGCACACAGAACCAGAGCTGAGCCAGTACTTCAGAACACCCAGGAGAGAGggcttcAGTGTGGCCTATGTCGTGTTTAAGAAGGCTTCCTCTGTCGCTGCCGCCAAGAAGCTGAGTCCTGCCACGCCATTGGTCCTCTCCACTGAGCAGCAGCCAATCAGGACGGGGATtcagaaGTGGGCTGACCAGTACAGCGCCGCCCTGGTGGACACACGGCAGCTGCAGGCTGCAGTGGACGCCTACATGCTGGAGCACGACCGGAGGAAAGAGGAGGCGGCGCAGCGCGAGGCGGAGGCTGAAGGGGCGGACGGCGAGGGTTGGGTCAAGGTGTCCCGGCGCGGCCACACTGCCTCCCGCCCCCACAGCGAGCCGGCCAATCACAGAGCGCTGGAGcgggagaagaggaagagagcgAGGAAGGAGCTCATGAACTTCTACACCTGGCAGCACAGAGAGACGCAGAGGGAGCACATTGCCGAGCTGCGTAGGAAGTTTGAGGAGGACAAGCAGCGCATCGCCGTATTGAGAGCCCAGAGGAAATTCAGACCCTACTGACACCCTCCCCTCTGTTTCCACTACACCTCCTCTCCCTCGCTCCAGGACAGTTCACACCTCCACTTgtttatcagtttattttgtattttttcttttacaacaaaataaaaactcaacaGAAAC

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014942 False 784 mRNA 0.58 5 40371393 40373870
TU93241 True 3067 TUCP 0.49 7 40369137 40373863
TU93243 False 2344 TUCP 0.48 7 40331987 40373863

Neighbor

gene id symbol gene type direction distance location
AMCG00014943 NA coding upstream 1062 40324822 ~ 40330925 (+)
AMCG00014937 NA coding upstream 107984 40220472 ~ 40224003 (+)
AMCG00014939 NA coding upstream 120590 40210828 ~ 40211397 (+)
AMCG00014936 NA coding upstream 125188 40188709 ~ 40206799 (+)
AMCG00014932 NA coding upstream 180480 40147423 ~ 40151507 (+)
AMCG00014941 NA coding downstream 8412 40382282 ~ 40385629 (+)
AMCG00014947 NA coding downstream 14036 40387906 ~ 40391206 (+)
AMCG00014948 NA coding downstream 45704 40419574 ~ 40437283 (+)
AMCG00014956 NA coding downstream 353932 40727802 ~ 40729957 (+)
AMCG00014955 NA coding downstream 371826 40745696 ~ 40759910 (+)
G74656 NA non-coding upstream 45849 40284901 ~ 40286138 (+)
G74649 NA non-coding upstream 98567 40232774 ~ 40233420 (+)
G74647 NA non-coding upstream 100106 40231617 ~ 40231881 (+)
G74615 NA non-coding upstream 193728 40101893 ~ 40138259 (+)
G74557 NA non-coding upstream 325333 39987502 ~ 40006654 (+)
G74683 NA non-coding downstream 22428 40396298 ~ 40397074 (+)
G74690 LOC106579244,LOC101478282,LOC102307186 non-coding downstream 37011 40410881 ~ 40413637 (+)
G74768 NA non-coding downstream 115331 40489201 ~ 40491346 (+)
G74769 NA non-coding downstream 155844 40529714 ~ 40530310 (+)
G74778 NA non-coding downstream 272311 40646181 ~ 40646393 (+)
G74643 NA other upstream 167990 40162016 ~ 40163997 (+)
G74642 NA other upstream 171409 40159901 ~ 40160578 (+)
AMCG00014928 NA other upstream 358917 39963768 ~ 39973070 (+)
AMCG00014925 NA other upstream 378709 39951188 ~ 39953278 (+)
AMCG00014923 NA other upstream 456559 39865082 ~ 39875428 (+)
AMCG00014954 NA other downstream 121041 40494911 ~ 40532273 (+)
G74803 NA other downstream 516104 40889974 ~ 40990904 (+)
G74925 NA other downstream 715905 41089775 ~ 41090612 (+)
G74952 NA other downstream 840080 41213950 ~ 41215242 (+)
AMCG00014963 kdelr3,LOC106601218,LOC108262534 other downstream 960616 41334486 ~ 41340160 (+)

Expression


Co-expression Network