AMCG00014945 (LOC107382204)


Basic Information

Item Value
gene id AMCG00014945
gene name LOC107382204
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40308887 ~ 40315938 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014945
ATGGCGGCGGAAGGCGATTTCCTGTTACGGTACAGAGCCGTTTCGAATAAGCTCAAGaaGTGTGAGCAGACTCTGTTCAATGCCCCGGGGGAGGCCCTGGCCCTGACCGAGGCTGCCCGGCTGTTCCTTCACTGTGAGCGGGAGACCCAGGCACTACGAGCCCCAGGCTTCTCCGAGCACCTGCAGGCCGCACTCAACTGCTATAGCTTTGCCATTAAGGTGTATATCGAGATGAATCAGCCAGTCATGGCGGCCAGCTTATGTCTGGAGCTGGGCAACACGCTGAAGGAGATGGGGCGGCCTGGGGAGGCTCTGGTTCACTTCCAGCGTGcagcagagctgcagagtcACACCCCTGCTGAGGCCCTGCTGGCCCTGCGTGCGCTGGCTTCCTGCAAAATACTGACACGTGAGTCTCTACCATTCACTTACACTGGGCCTGGAGGTAGGAGGATGGCCTGTCAGGAGAAGGACATCGAATCCCTGAAGTCGCTGCAGACGGAACTGTGgcctctcctctctccagaGCAGAATCACTTGCTCCACCTGGTGTTGATGGAGAGGGTCGCCCCCTCTGGGCAGGGGATATAACTACAGCCTCCCAGACTGCACTGCGgtggagaaacacacacacactgtgcggTGCTGTAGAGCCCTGTATCATTCTGCCCCACAGGACTTCACACTGTCCTCCGCTCTATTGCactccactgtgctgtgctgtattacaCCGCACTGTGTCACTGGGGAACAAGTGGGTCCGGGCTGGTCTGGGGCTGTCAGGTGTAAAGGTTGTGTAACTGGGTTGTGTTATTTGCTATATTTATCtgcctgtgtgttttttgtctagtacacacacaacctctgtctctctgtttttgtatgtttctctgtctctcagtgtgtgtctgtctgtctgtgtgtgtttccactATGGCAGCCAATCATATGGCTGGATGTCATTAGGAAGTAAAATGCTGATACAGACAAGAAGACACAATCAcgtattagttttatttatgtattttattttatttctgcatttatttcagCAAATGTAATCGAGATTCTAATTGTGTGGCataaagagaataaaatattatttttaaccatattaagcacagaaaacaagaacagtgtacatttcagtgtgagagtgtgtgtgtgtgtatataagtgTGTTGGTGGGGGGACAGTTACAGATTTTCATAGATGTCTTCACTGGAATTCTGAAGTTTGgggtcCTTTCCTAtatccttcttcttcttcctctcgcTCACTGTGTCATTCTCCTCTGGGGTCAAGGGGTCAATGGCATTGTAGATCGAGTGAGTGTGAGGCTCCAGAGCCTTGTAGACAGAGCCTGGGGTCactggctgctctctctcctccttgtcCCTCCTTCTGCACTGTTGCTCTGTATTGACACAGCACccCCTgctctccagcagcagcagcaatgatCCAATTAAACTGAACAGAGCCAGTCCAGAGCCCAGCAGCCCCACGACCAGAACCACCCAGGATGAGCCCCCGCCCCTGTAGCCCTCctctgaga

Function

NR:

description
PREDICTED: factor VIII intron 22 protein-like isoform X2

GO: NA

KEGG:

id description
K20135 F8A; factor VIII intron 22 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014945 True 1558 mRNA 0.51 9 40308887 40315938

Neighbor

gene id symbol gene type direction distance location
AMCG00014934 NA coding downstream 144307 40162386 ~ 40164580 (-)
AMCG00014933 NA coding downstream 148538 40153419 ~ 40160349 (-)
AMCG00014935 NA coding downstream 201222 40085776 ~ 40107665 (-)
AMCG00014930 NA coding downstream 269562 40029772 ~ 40039325 (-)
AMCG00014927 NA coding downstream 347891 39958825 ~ 39960996 (-)
AMCG00014944 sept3,LOC106952311 coding upstream 32284 40348222 ~ 40359702 (-)
AMCG00014952 NA coding upstream 78565 40394503 ~ 40398556 (-)
AMCG00014953 zgc:158803,LOC108258445,LOC105898746,LOC105916152,LOC105012183,LOC107700834 coding upstream 94936 40410874 ~ 40416728 (-)
AMCG00014950 naga,nagab,LOC102776695 coding upstream 113444 40429382 ~ 40431042 (-)
AMCG00014957 NA coding upstream 570077 40886015 ~ 40898700 (-)
G74725 NA non-coding downstream 9708 40296861 ~ 40299179 (-)
G74625 NA non-coding downstream 169786 40101893 ~ 40139101 (-)
G74633 NA non-coding downstream 179521 40128921 ~ 40129366 (-)
G74611 NA non-coding downstream 265597 40043007 ~ 40043290 (-)
G74597 NA non-coding downstream 303820 39962930 ~ 40005067 (-)
G74736 NA non-coding upstream 22126 40338064 ~ 40360225 (-)
G74738 NA non-coding upstream 50022 40365960 ~ 40368045 (-)
G74845 NA non-coding upstream 119502 40435440 ~ 40435670 (-)
G74854 NA non-coding upstream 330244 40646182 ~ 40646384 (-)
G74860 NA non-coding upstream 380049 40695987 ~ 40696241 (-)
G74726 NA other downstream 4802 40303231 ~ 40304085 (-)
AMCG00014946 NA other downstream 14361 40281194 ~ 40294526 (-)
AMCG00014938 NA other downstream 40402 40235058 ~ 40268485 (-)
G74593 NA other downstream 296806 39934893 ~ 40012081 (-)
G74569 NA other downstream 325491 39901470 ~ 39983396 (-)
AMCG00014951 poldip3 other upstream 85845 40401783 ~ 40410777 (-)
AMCG00014949 ndua6,ndufa6 other upstream 121321 40437259 ~ 40534709 (-)
G74862 NA other upstream 381915 40697853 ~ 40698276 (-)
G74870 NA other upstream 466902 40782840 ~ 40783230 (-)
AMCG00014958 NA other upstream 590287 40906225 ~ 40909451 (-)

Expression


Co-expression Network