AMCG00014948


Basic Information

Item Value
gene id AMCG00014948
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40419574 ~ 40437283 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014948
ATGGCAGCAGCGATATCCCGAGCCCTCAAACTGCCCGGTAAGGCCGTCAGTGCGCGCAGCATCCACCGCAGATCCGCGCAAATAACCGCTGCTTCCACACGCACAGCTTGCGGTCGTTTCCTGACGAGGGGGCCGCTCTGCAGTCAGCGTTATTGTGACGGCGTTGAGTGCAACATCatcaatattattGCGGACAGCGAGAGCGAGGAGGACGACCTGGTTCTGAACTACCCTAGAAACGGCCCTGGCGACAGCAGAGGTGGGCTCGGAGGGGCGGGGGGCGGAGACGCGGGAGCGGGTGGGAGGGTGGGGCGTGTGCGAAcgagggaggaggaagaggaggaagaggaggaggagtggagaGGCCTGCAGCAGAAACAGAGGGACCCCAGGCTGTACCAGGTCAATGACCCGACTCAACGGCAGTACTGGGCCCAGAGGGAGCTGGATGGAGCCAACGCGGTCCTGGACGGTGGTCCTGGTGCTGATCCGGAGAGCAAGAGACGATCCGGCGCCGGGGCAGTGCGGACGGGGCTGTTCCTAGGGccactgctctgtgctgtagTCGTGAACCAGTCCTGTGGGTCCAGTGTGGGCTGGGGGGTGCGGTGCCAGGTGGCCCGGTTCGGCTGCCCATGGGAGGTGGTCTCCCCAGCCATTGCTCTGCCGGACCTGACCGGCGATGCCGTGTCCGACCTCCTCATCGCTACTCTACCTGCCGACCAGGTTTCtgacctctctctcctcctcctctctggaGCTTCCGGCTCTCGCATTGGTCGCCCCGTGACCTTTAACCTGACAGCACAAGGGAAACTGATTGGCCCAGAGCTGCATTTGACCAAAGTTGGCGCCCACTACATCCTGTTTGGCCTGGGTACTGTGGAGGCCGCCTCTCTGAAAGATATTTACATTCAGGCAAGTGGGAGGCCGCCCTTGCCCCGCTCCCTGCGTCAGAAGGACCCCAGCTGGGAGCGACTGAGGACCGCCAATTCTTCCACTCTCATTCACATTTCCAGtggcaGTGTGCAGGTGGATTTCCTGCTCCCCCTGGTGGTGGGCTCAGTAAACTGCAGTGACTGGGCGCTGGTGTGCGGTGGGGGGCTCTCTGTGCTGGGTGGGGGCGATGCCCACACGGTCTGGAGCATCAGAACCCTCCCTTTacacagtCGTCCCGTCCCAGGCCACTTCAATGGGGACATGACCCTTGACCTCCTGGTCCAGTCGTCGCCCTTCCCCCGGGTCAGGAAGGTGCAGGTGATTGACGGCTCTACGGGGCGGAGCCTGTGGGAGGCGGAGTTCAGCTGCTCTCTCCCGGAGTTGGAGGGCGTGGCTGTAGTGAGCGGGCTGGGCCTGAGGGGGGCTGTGGCGGGAGGGACGCCGGTGTGGCTGGGGCCCCCACAGCCCGGGTCCTTCGAGGTCAACAAGTTCTACAAGGGACTGAGCTTCGTACAGAATCAGCAGCACTCGCTCGCTAAGATGGCGTCGGCTGCGGCTCGCTGTGCGCTGGGCTCCGCTCGGCTTCTCGCCCAGAGAAATGGTGGCTTTTGCAGGCAGAACCGCAGCGCTGCGACTGTCCCGCTGACTGTGAGCCGGACCGCGGTCACCACGGCCTCGGGCGCCATTTTACCCAAACCGGTGAAAacgTCGTTCGGGCTGCTGCGCACCGTGGTGGTGGTGCTGCCCTTCCTGTACGTCGGGACTCTGATCAGCAAGCACTTCGCCGCCCTGCTGGAGGAGCACGACATCTTTGTCCCTGAGGACGATGACGACGACGACTGAGCGCCAGGACATCCTAAGAGGGAGGACAGTGAGGAACAGACGGACAGACACTACAGCCAGCCAAACACAAAgaccagaaaaaaaatggagtggaagaagaggaagtgatggggtgggggggggtaaaGAACTGAACCTTTCTTCAACATACTTCCTCTCCTCCTTTTTTCctgtgtccatctctctctctccgccctCCATGTAAAGGACAGCATGGCTTGACTCCAATTTGCATGTACATACCGACACcccaatgaaaataaagtgcagtCAACCTTAATGATGAGCACGGAAGGCAAATGTAgctattttggtttgtttttggaatCACTGgattgtctttaaaaaataaaaagaaaaaaaaagga

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0022900 electron transport chain biological_process
GO:0010467 gene expression biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014948 True 2150 mRNA 0.60 13 40419574 40437283

Neighbor

gene id symbol gene type direction distance location
AMCG00014947 NA coding upstream 28368 40387906 ~ 40391206 (+)
AMCG00014941 NA coding upstream 33945 40382282 ~ 40385629 (+)
AMCG00014943 NA coding upstream 88649 40324822 ~ 40330925 (+)
AMCG00014937 NA coding upstream 195571 40220472 ~ 40224003 (+)
AMCG00014939 NA coding upstream 208177 40210828 ~ 40211397 (+)
AMCG00014956 NA coding downstream 290519 40727802 ~ 40729957 (+)
AMCG00014955 NA coding downstream 308413 40745696 ~ 40759910 (+)
AMCG00014961 NA coding downstream 578585 41015868 ~ 41035772 (+)
AMCG00014960 NA coding downstream 599747 41037030 ~ 41041391 (+)
AMCG00014966 NA coding downstream 866525 41303808 ~ 41312018 (+)
G74690 LOC106579244,LOC101478282,LOC102307186 non-coding upstream 5937 40410881 ~ 40413637 (+)
G74683 NA non-coding upstream 22500 40396298 ~ 40397074 (+)
G74661 NA non-coding upstream 39821 40303232 ~ 40379753 (+)
G74672 NA non-coding upstream 69736 40342595 ~ 40349838 (+)
G74656 NA non-coding upstream 133436 40284901 ~ 40286138 (+)
G74768 NA non-coding downstream 51918 40489201 ~ 40491346 (+)
G74769 NA non-coding downstream 92431 40529714 ~ 40530310 (+)
G74778 NA non-coding downstream 208898 40646181 ~ 40646393 (+)
G74782 NA non-coding downstream 264136 40701419 ~ 40701849 (+)
G74786 NA non-coding downstream 345557 40782840 ~ 40783230 (+)
AMCG00014940 NA other upstream 14936 40338215 ~ 40404638 (+)
AMCG00014942 NA other upstream 45704 40331987 ~ 40373870 (+)
G74643 NA other upstream 255577 40162016 ~ 40163997 (+)
G74642 NA other upstream 258996 40159901 ~ 40160578 (+)
AMCG00014928 NA other upstream 446504 39963768 ~ 39973070 (+)
AMCG00014954 NA other downstream 57628 40494911 ~ 40532273 (+)
G74803 NA other downstream 452691 40889974 ~ 40990904 (+)
G74925 NA other downstream 652492 41089775 ~ 41090612 (+)
G74952 NA other downstream 776667 41213950 ~ 41215242 (+)
AMCG00014963 kdelr3,LOC106601218,LOC108262534 other downstream 897203 41334486 ~ 41340160 (+)

Expression


Co-expression Network