AMCG00014951 (poldip3)


Basic Information

Item Value
gene id AMCG00014951
gene name poldip3
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40401783 ~ 40410777 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014951
gcaACAAATACACTGACTGTTCAGCTTCTGTCTGGGTGGGAGAACTTGGTGTTCCCATGATTTTGTGACTCATGAgagatgaataaaataaagagggatgaagatggagggagaggggggatgCTGAGGGAGTGGTTTGGTGTGTGAAggtctttaattaaaaagctttattggcacgACTAAGTGACATCAGTGTGGCCTtgatctttctctctcctcgCTCTTGATCTGTCCGGGTCGGATGcttttccatttgatttttaattttgtgtttaatttggtttgtttttcagtttatttttattgcattggTTTGGCAGAATGTTTTTGTCTGAGGTAGTCTGAGTGTGGAGGGGGCTGCTGAGACGGTGACTAGTAGAgtaactgaaacacacacacacagcgcgaGAGCTAGACGCACACGCAGAGACCAAtacagacagacggacacacactgacaaactgacaGACGCACTCACCCATAGATGGAGACTGAAACACACGGTGGCCCTCTGGAAACTGTAATGCATTTGGGAGCTGtaatttaatgtacaataacaagaaagagacaaataaaacattagtttCATTGTACAAATGTCGATGTCCTTGTGTGGTCTGTTGATAAGTGAGCGGATACATAGTGCctcattgttttaaagtgtacCGGGCGGGGGAGAACAGAGTCCCTCTCCGCGGCGGCGGCGGCCCCCTGCTGGTCACACGGGCTCCACAGCGCAGGCGCCCGGCCATGTGAAACAGGAGCGTCAGTGCGCATGTCACTGTCCACGACCTCTCCCGGGAATAAACGGGTGTCTGCGCGCACACGGCGGACTCGTGCAGCTGCGGGGCGCTTGTCTCTCTTCGCGCACAGCGCCCTCTCGTCCCTTGTGTGTCCCTCGGCGGCCACTGTCCCGCTCTGACCCGCTTCCTTCCCAGCCCCCCTTGCGCCGTCTCAGCGCCGCCTCCGCTCGCTTTCGTTCTCTCAGAATCAAGATGGCGGACCTTTCACTGGACGATGTGATACGGCTACGCGGTTTTAACTCCAAAGCGAATACGAGAGGGGGTGGAGGTGGTGGGGGACTACGCTCACGGATCGGTGCCCCCCCCTCGGCCCCTGTGGCCCCCGTGCTGTTCCGGGGGGGAGTGGGGGCATTCGACGCTAGACAGAAAATTGGAGTATCGGACGCCAGGCAGAGACTcggggggggtggaggaggagTATTCCCAGTGAAAGACGCTCGGGAGAAACTCACCCAGAAAGACGCCAGATTCCGCATCCGAGGGGGAAGTGGTGCGGCCCCGGGGGCAGGGGCTCCGGCGGTGGTGGTCCCTGTATCGGACGCCAGGCAGGCTATCAACTCAcgcaagcagcagcagcaagtacacaataacaataaccacCACCACTCTGTACAACTACACAACACTGCCCCCCAGCTGCAGCCCCACAGCCCCCAGTCTGCCCAGTTCAACCCCCATCCACTCCTCGCTGGGCTGTCCCACTCCGTGCCTCTGTTCCTGCCTGTTGCCCAGCGAGGCTTACTGTCCAGAGTGGGCCAGGGGGCCCCTGATCAAGGGGGCGGGCCCCGCAAGCTGATGGACGCGCGGGATAGGCTGAGTCTGAAGAGGAGCATTGCGGGGGGCACGACCACCCCGGGGGCTGCCACGCCCTCCATGAAGATCACCAAGACGATACAGCAGAGGCCGGTGGGTCTGAGCAGCGGTGTGCGGATCAATGTGATGAACAGAGCGCCGGCGGGGCAGACGgGTGATGAAGACGATGGTATGTCTCTGATCCCCAGCAAGCAGATGAAGATCACCACCACCAATGACTTCGCCCAGCCTCGGgCTCATACGGTCAGTGGCTCCTGTTTCTCTCTGGGCGGCCCCCCCTTCACCAAAGTGGTTCAGAATGATGCCTACACGGCGCCGCCCCCCCCTGCCCCAGCCCAGGCGCCCCCCCCTGCCCCTGCTGCGCCCCCACAGCGCCCCCCCGCCCTGCAGCCCGAGCTGTTCTGTGTGTGCGGGGCTCTGAAGCGGGCGCGGCTCCTGAGGTCAGGGGTCGCCGAGGTCGTGTTCGTTAGGAAGGATGACGCTGTCGCCGCTTACAGGAAGTACAACAACCGCTGTCTGGATGCGCCCCGCCCCACCCCCTCACAGCCGCCCCCTGAGGTGGACCCCCAGACGGTCCTCAGAGCGCTGTTCAAATCTCCCCCCGGGCCCCCTGCTGACCCTGCCGCCCCCCCAACCGCCTTTCGCATCAAGATATAG
>TU93349
CCACGCCGGCTGTGACCGCCCCCCCCGCGGCACCCCAGcctgtcTTCAGTCCATTGGAAGGGACCAAGCTGACTGTGAACAACCTGCACCCCAGAGTCACTGAGGAGGACATTGTGGAGCTGTTCTGTGTGTGCGGGGCTCTGAAGCGGGCGCGGCTCCTGAGGTCAGGGGTCGCCGAGGTCGTGTTCGTTAGGAAGGATGACGCTGTCGCCGCTTACAGGAAGTACAACAACCGCTGTCTGGATGGTCAGCCCATGAAGTGTAATCTCCACATCCAGGGAAACGTCATCACCTCTGACCAGCCCATCCTGCTgcGGCTCAGTGACAGCCCAGGTTCCAGGCAGGACTCCGGCCCCTCCGCCCTGCGTCGCTCAGCGCCCCGCCCCACCCCCTCACAGCCGCCCCCTGAGGTGGACCCCCAGACGGTCCTCAGAGCGCTGTTCAAATCTCCCCCCGGGCCCCCTGCTGACCCTGCCGCCCCCCCAACCGCCTTTCGCATCAAGATATAGGGCAGggacactaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgatacacactgaattatacacacacattctctgaCAGTCTCCCAGTTAGTCCCAGTATTACGCTGAGTGTCCACAGACCAGACTAAGAGATGGCACTGGACTAGTCTGCAGTGGACTGGACTCCTGCACAGGGCTGTTATGGACTGGGTTGTGTTGGTCATGGACAGTGACCTTTCTGTTCACAAACACTGGTCTGATGCACTACAGGACCTGTGAGAGGGAGGGACTgcaaggaagaaagaaagagagcgaTGAGTGAATGTGGGACAGGGGAGAGcgggggacacagagagaggcgGGGTGTTATATCTTGTGATTCTGTAGTTCTGCATGTCGTGAGCCTCAGCTGTCCTGTATTCCCAGAGACCTGCACAGTTAAtacagacagtgtgtgtgagtgagtgtgtgcgtatttttatacattttatagtaCAGTTAACACCATGTCggtctcttcctctctctctggtgtTAATGTACAGGACTAGTGTCCCGTCTGTCAGAGAGCCTGACCCTCTCcttcgctccctctctctgcaacaagaaaactaaataaaaacagaagctCAACTCATCTCCCTCctccccatccctctccctctctttctctctctctctctgttggtTGCGTTTTGTGTCGTTGTTCCAGTCTCCCGCAGAGACGTAGGGACTCTGtatctgaaataataaatgtttctgGTTTATATAGAAATCCTCTGTGTTGTTTGGGTAATCATTGAAGgtgtccatctgtctctctcgtTTGTCAAGACTCAAGATGTGTGTTTCAGTAGCCAGGCTATACCCAGAGCAATAATAAACCACATTCACAGACAGCAGCTCCTCTCTCGCTACATCTCTCCCTGCCCTTTCTATCCCTCGATCGGTTTTCTCTTCTGCCATTTCC

Function

symbol description
poldip3 Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nuclear speck. Orthologous to human POLDIP3 (DNA polymerase delta interacting protein 3).

GO: NA

KEGG:

id description
K22414 POLDIP3; polymerase delta-interacting protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014951 True 2274 mRNA 0.59 10 40402766 40410777
TU93349 False 1492 TUCP 0.54 5 40401783 40405328

Neighbor

gene id symbol gene type direction distance location
AMCG00014952 NA coding downstream 3227 40394503 ~ 40398556 (-)
AMCG00014944 sept3,LOC106952311 coding downstream 42081 40348222 ~ 40359702 (-)
AMCG00014945 LOC107382204 coding downstream 85845 40308887 ~ 40315938 (-)
AMCG00014934 NA coding downstream 237203 40162386 ~ 40164580 (-)
AMCG00014933 NA coding downstream 241434 40153419 ~ 40160349 (-)
AMCG00014953 zgc:158803,LOC108258445,LOC105898746,LOC105916152,LOC105012183,LOC107700834 coding upstream 97 40410874 ~ 40416728 (-)
AMCG00014950 naga,nagab,LOC102776695 coding upstream 18605 40429382 ~ 40431042 (-)
AMCG00014957 NA coding upstream 475238 40886015 ~ 40898700 (-)
AMCG00014959 LOC107676178 coding upstream 501417 40912194 ~ 40922866 (-)
AMCG00014962 NA coding upstream 578895 40989672 ~ 40990791 (-)
G74738 NA non-coding downstream 33738 40365960 ~ 40368045 (-)
G74736 NA non-coding downstream 41558 40338064 ~ 40360225 (-)
G74725 NA non-coding downstream 102604 40296861 ~ 40299179 (-)
G74625 NA non-coding downstream 262682 40101893 ~ 40139101 (-)
G74633 NA non-coding downstream 272417 40128921 ~ 40129366 (-)
G74845 NA non-coding upstream 24663 40435440 ~ 40435670 (-)
G74854 NA non-coding upstream 235405 40646182 ~ 40646384 (-)
G74860 NA non-coding upstream 285210 40695987 ~ 40696241 (-)
G74864 NA non-coding upstream 293134 40703911 ~ 40704607 (-)
G74875 NA non-coding upstream 410917 40821694 ~ 40822155 (-)
G74726 NA other downstream 97698 40303231 ~ 40304085 (-)
AMCG00014946 NA other downstream 107257 40281194 ~ 40294526 (-)
AMCG00014938 NA other downstream 133298 40235058 ~ 40268485 (-)
G74593 NA other downstream 389702 39934893 ~ 40012081 (-)
G74569 NA other downstream 418387 39901470 ~ 39983396 (-)
AMCG00014949 ndua6,ndufa6 other upstream 26482 40437259 ~ 40534709 (-)
G74862 NA other upstream 287076 40697853 ~ 40698276 (-)
G74870 NA other upstream 372063 40782840 ~ 40783230 (-)
AMCG00014958 NA other upstream 495448 40906225 ~ 40909451 (-)
G74887 NA other upstream 512187 40922964 ~ 40925437 (-)

Expression


Co-expression Network