AMCG00014957


Basic Information

Item Value
gene id AMCG00014957
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40886015 ~ 40898700 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014957
CCGCCCAGGAAGTAGTCGAGGGAAACAGCGAGGTCCTCTCGCCGTGAAACTTCTCAACTTTTCGCAGAGTCGGAAATACAAACtttttattcactttatttatttagttgctGTTATAACCGGGATTCGCCCCTTTCCGCGGGCTGAGAGCGATGCAGCGGTACAGAGAGATGGGCAATGCGGCCGAACGAGGCACTTTTTTCCGATAGTTTCTCTACTTCTGGGTTGTGTTTGCTAAcctgaagtaaaacaaaaaacaaaaacaaaacacgtcGGATTGGGGGGGAAATAACTAGTCGTTTTACCCAGATTCGCTAACGACTTCACCAGTCCTCTGCAAgcttgttttgttgcttttattaatattgcctttttcttctgctgtccAAATCTCGGGGATTGATCTTGGGAGACATCACTGGCTGCTCAAAtctctcctctatctctctctcacatctGGCCAAATATGACGCCTGATCTTCTGAACTTCAAGAAAGGATGGATGTCCAAACTGGATGAGAATGGAGAGTGGAAGAAGCACTGGTTTGTGCTAACGGATGCAGGCCTGAGATACTACAGGGACTCGGTGGCAGAAGAGAAGGATGATCTGGATGGTGAAATAGAGCTGCACTCCTGTATCGACGTGTCAGAGTATAATGTGGAGAAGAACTACGGCTTTCAGATAAGGaCGCGGGAGGCGGTGTTCACACTGTCAGCGATGACCTCGGGGATCCGGAGGAACTGGATCGAGCGCCTCTCATCCCGCCGCCCGTCCTCCCACCACACCCTCGAGGTGGGCTCTGAGGTGCCGGCCCCGCAGCGCTTTGACTACGTGGAGCTGGCTCCTGTGGCCTCTGAGCCCCGGGGGGCGGGACTTCCTCCGCCCTCGTCCACtgagagggaggtgggggaggggttgGGGAAGCGCTTGGAGGACAGGACCCGCTGGTTCGAGACCACGCCCCCCACTTCCAAAGCAAGCGGCGCCAACAGCCAGTGGGATGCCCTTCTGGCCCAGAAGGGGACAGTGCCCGTCACGGCCGAGGAGAGGCAGCgtctggaggaggaggtggaaaaGCGGTGGGCGGAGTTTGAGAAGCTGCCGATCAGGGAGATGCGGTCGCTCCCTCTGATTGGTGCACGCTCAGGGCAGGCGGCCAATGAGGCGCTGCTGAAGGAGGTGGCGTCTCTGAAGCAGGAGCTGCAGCGCgtgcggggtggggggggccaGTGTGGCGGTGCAGGGGGCTCGTGTGGGCGCAGTCTGGAGGCCATGGAGCGCGCCCACCGGCAGGCTCTGGAGGAGATGCAGCGGCAGCACGAGCGGGAGAGGAgcgagctggagagagagaaagagcggctgctggaggaggaggcgcACGCCACAGCACAGGGTACTGAGGGGGTGCGCCATCCTGGGTGGTGCAACGGGTCAGAGACAGAGGCCCTGCGCAGAGAGCTGGACAGTCTGTCGGAGAGATACTCCCAGAAGTGTCTGGACCTGAACAgggcagagcagagcagtggagagagggagcgagagatcagccacagggagagacagatggagCAGCTGAGGAAGGAGAACCAGgaGCTGCAGTCCCGCCTCTCGGAGGAGATTGGTCGATTGCGTTCCTTCATCACAGGTCAAGGGTCAGATGAAGGCAATTCCCTCAGAAACAAGGATGGGAACTGTGAGCTGGAGgtgtTGTTGCGAGTGAAGGAGAACGAGGTGAAATATCTGCACAAGGAGATCAGCTGTCTGAGAGACGAGTTACAGACTCTCAACAAGgaGAAGCGGTCGGCATGTGAGCGCTATAAGGAGTTGTATGTGGAGCTGAGTGGGATGAAGAGCCGCAGCGAGCGGGAGATCGAGACGCTGCGGGAGCACCTGAGATTGGCAATGGCCGCCCTGCAGGAGGGACGGGGCCTGCAGAACAGCCTGGCCGACTGAGAGCGAGACGGCCACGTCAGCTCTTGGGAGACGGTCCCTGGCAAAGATTTCCCCCCAGCTTTTTTGCTTTCGCTTTTGGAGACAGTGCCTTAGCCTTTCCTTTCATCAGCCAATGGGGAGCCAGGGTTCGCCCCATCTGATCACTAACTAGAGGCGATGGTTGCATTCTTGTAGTGCAGCTTTacacagttctgcacagatttgcagaatcccaCTAATCCCATTGGTGAAGCCGTGCATCTCTGCGCAGACCTATGGAAATCTGACTACACAAACGTGACtcatgttgtgggtttgtgtgttgctgtgctgcTCTACCTGCCTTTAACCACCTGTGATGTGGTTTAGATTATAGCGGTAGAGAGAGATCACAGTCaagtgcaatgttttttttgttcactgtttttaatgatcactttttgtttattattgggCCAGCACTGTGTAGactgtagtatagtgtagtatagtaaaGGGGCCCAGATTGTCTTTATAACTTGAACAAAAATGTGATGTGgtttttaaacaaaccaaaccttCAAAAATATtacctgttttaaaaaaattacttttatcCCCCAATATATTTTCTGAGTTTGATTCTGCTGTAGACAGGATCAGTCTGAGGGGTCGTTGTCGGGCTACTGGGCCCAGTTCCTCTGAAGCAGAGTTTCAGACCGTTGTCAGAGGTTACATCAGTAGCATTGAAGGGAGTGTGCGGTTTtctgattgtgtttgtgaatgCTGTCAGTCAGCGAATCTAAGATATTGACAGTACATGGAGATGGAAAGACACAGactgggggagagggagagtgcgCCCTCTGCACACAGGGCTGCGCATCTTCAGTTTACAAAAACAGACCAGGTGAGACAGACGGACAGTGTGTTGAGGGAGGGTTGTATCTGACGGGCATGCAGTAGTTTGCACAGTGCTGGTGTTAAAGGCAGGTAAAGCAGtcagaaacaacacaaacactgacaacGAGACACAGCAGAAAACATACACTGGAGCGCCACACAAACTGCACTTTCTTTAACGTAAACACAGAGATCaaagattatgtttttattgttaccTACTTCGGTTTTGGGGGGCAGTTTTAGACTCTACATACAAGGTGAAGCAAAGGTCCCATACAGTAGCGTAAAGGAGTTTTTCTCCACCTGACACTCGGCCCCTCTGAGCTCTGTGTCCCTCCACCGCAGGCTTGGGGCTCTTGGCCGTGGGGGGGAAAGGAATCTGCACAGCTTcacctccctgtctctctgacCGTTCCCAGCGCACAGCTGCTGCTTTGTGACGGACGGTTGCAGATTCCTGTGACAGAGCCCAACTGTAGCAGCGGGACAAGGCCATTCACAGGACGAGATGGAAACTGTTTATAATGGGAGCACAGTCATtcatctgcattcattaataAAGTAATGCTCTGTAGTGACAATTGCTTCACCCTGTATgcatagatggatggatggatggaaggaTCAGTgtgatatacatatacatgtatatatatatattaagaaatcTTCAATGGAGATGCACACAGACTCCCAGGGCACAGCTGTCTGATCCACTGCAGGATTGTGGGATATTTGCATCATCTTTAAAAGAGTGAATGAAAACCGCATTAATATTATGGGGGACCTGAGGGAGGGAGCGTCAGTCTCttccaaaaagaagaaaaacaagttaccatttaaactatttaattcttattttattcttattctgatgtcatgttttaaatggtttgtttaCTTTCGGTTTGTCTGGTTGAATCCTGCTGTGGAGCTGCGAGGGAGAGGCTCAGGGCTGGACTGCCGTTACTGGAAACCCCCGATACCGTTTAATTCCCGGGCAGGAGCCCTGATTACAGTCATCAGCACCTGCTGTTGCAGTCACCGACCACACTCACTCGTTTTCTCTGTCCATCTCTTTGTCACTCTCAGCTGTAACAACTAGAGATTAACTTCACCCCCCCTTGTAACAGCTGGagacattctctctctctctgtgcactaAACCAATGCAGCTCATACTTTAATACAAACCCTAATGTTGACCCAACAGGCGAGATGAATACTGGCCCtaatagatagacagacacacatacagggagagagaggcagagatgcAGTAGGGAGATTGAGATATTCATAGCACATTACATTTGCCCCGTTTATCCCCATTTCTGTCCCCTGTAcatgtgtttaattgtgtttattttctataatgtaGTTAGTGAAGCTTTAATGAGCCAATAgagtatgtttttgttgtgtggGAGAATAAGATTTAAAATCAGTCGATTACAACTGGATCCAAAAcctcttttttatataattattgacagagtgttacattttttattctaaaatattatatatatatttaaatacacatcttTATGTCAAGTATCAATGTtttacaatcaataaaat

Function

GO: NA

KEGG:

id description
K23751 TRIOBP; TRIO and F-actin-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014957 True 4402 mRNA 0.50 12 40886015 40898700

Neighbor

gene id symbol gene type direction distance location
AMCG00014950 naga,nagab,LOC102776695 coding downstream 454973 40429382 ~ 40431042 (-)
AMCG00014953 zgc:158803,LOC108258445,LOC105898746,LOC105916152,LOC105012183,LOC107700834 coding downstream 469287 40410874 ~ 40416728 (-)
AMCG00014952 NA coding downstream 487459 40394503 ~ 40398556 (-)
AMCG00014944 sept3,LOC106952311 coding downstream 526313 40348222 ~ 40359702 (-)
AMCG00014945 LOC107382204 coding downstream 570077 40308887 ~ 40315938 (-)
AMCG00014959 LOC107676178 coding upstream 13494 40912194 ~ 40922866 (-)
AMCG00014962 NA coding upstream 90972 40989672 ~ 40990791 (-)
AMCG00014967 NA coding upstream 279184 41177884 ~ 41226807 (-)
AMCG00014972 polr2f,LOC107727050,LOC107711805 coding upstream 514712 41413412 ~ 41416011 (-)
AMCG00014974 LOC108424764 coding upstream 523161 41421861 ~ 41435628 (-)
G74882 NA non-coding downstream 3592 40882192 ~ 40882423 (-)
G74880 NA non-coding downstream 14021 40871763 ~ 40871994 (-)
G74875 NA non-coding downstream 63860 40821694 ~ 40822155 (-)
G74864 NA non-coding downstream 181408 40703911 ~ 40704607 (-)
G74860 NA non-coding downstream 189774 40695987 ~ 40696241 (-)
G74905 NA non-coding upstream 101153 40999853 ~ 41000652 (-)
G74910 NA non-coding upstream 143398 41042098 ~ 41043583 (-)
G74950 NA non-coding upstream 312339 41211039 ~ 41211311 (-)
G74970 NA non-coding upstream 364068 41262768 ~ 41263907 (-)
G74978 NA non-coding upstream 371227 41269927 ~ 41270183 (-)
G74870 NA other downstream 102785 40782840 ~ 40783230 (-)
G74862 NA other downstream 187739 40697853 ~ 40698276 (-)
AMCG00014949 ndua6,ndufa6 other downstream 351306 40437259 ~ 40534709 (-)
AMCG00014951 poldip3 other downstream 475238 40401783 ~ 40410777 (-)
G74726 NA other downstream 581930 40303231 ~ 40304085 (-)
AMCG00014958 NA other upstream 7525 40906225 ~ 40909451 (-)
G74887 NA other upstream 24264 40922964 ~ 40925437 (-)
G74890 NA other upstream 33097 40931797 ~ 40933954 (-)
G74945 NA other upstream 270341 41169041 ~ 41169551 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other upstream 430613 41329313 ~ 41331770 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location