AMCG00014959 (LOC107676178)


Basic Information

Item Value
gene id AMCG00014959
gene name LOC107676178
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40912194 ~ 40922866 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014959
TCCCCATCTCCCCCAGGCCCAGTCCCCCCCGGCCCTCCCCCTCACTCCCCCACAGACCCCCATCCAGATCATCTCCCAGCCCCAAACTCAGATCCGCAGTGCCCCCTTCCTGCAGCCCAGGCCGCAGGCGGTGCAGACAGTGCAGCAGATCCAGCAGACCCAGACTCTCGCCATACAGAACCAGACCCTCCCAATACAGACCCAAACATTCCCACTTCAAACGCAGACCCTCCCGGTCCAAACGCAGACCCTCACAGTACAGACCCAGTCGCTCCCAGTGCAGAGCCAGTCACAGACCCAGACAGTGATGTTTGCTCCCAGTTTCACCAGCTCCTCCCAGTCTCGCATCATCCAGCACCCGGTCATCTACCACCAGAGCCCCACCACCGGCTTCCAAGTCCTCCAACCACAGGTGCAGAGCATCGTGACATCACCGCAGGTCCAGCCGATGACCATCCAGCACCAGAGAGTGCTGACCCAGACAGGCGCCCAGACCATCCAGACGCTGGCGTCCCCGGCAGTCCAGGCCATGCCACAGCAGGTCCAGCAGgtGCTGGTCCACCAGCCCCAGATCATTAAGACGGACTCCCTGGTTCTGACCACTCTGAAGCCCGATGGGACCCAGGTTCTGTCCACCATGCCAACCCATGTCAACCCAGGCAGCATCACCACCCTCACCACCCCCCTCCAGACCACCGCCCTGCAGACTCTGATGGGCGGCAACATCCTGACCACTCTGCCTGTGATGATGGGCGGGGACAAGGTGCCCATCAAGCAGCTGTCGTCGAGTGGGTCACCAGGTGGGGGCGGGGCCAGAGCAGGGCAGTGCCCAGATATGGGCATGGGGTGCGGGGGGCTGAAGGAAGGGGAGAGGAGGACCACCCACAACATCATCGAGAAGAGATACCGCTCCTCCATCAACGACAAGATCATCGAGCTGAAGGACCTGGTGATGGGCAATGACGCCAAGATGCACAAGTCTGGGGTGCTGAGGAAGGCCATCGACTACATCAAGTACCTGCAACAGGTCAACCACAAGCTGAGGCAGGAGAACCTGGCGCTCAAGATGGGCAACCAGAAGAACAAGTGCCGAGTCACCGACGTGAGCGTGTGTGAGGATGTGGAGATGAAGGCGGAGCTGGTGATGATGTCACCACCGGCCTCTGACTCGGGCTCTGCAGGGGAGTTCTCCCCTTACTCCATCGACTCCGAGCCGGGGAGCCCCCTGCTGGACACAGGACCGgtgAAGAGTGAGCCGAACTCCCCCGCCTCCCTGGGGGTGCTGGACCGCTCTCGTGTGCTTCTGTGCGCTCTCACcttcctctgcctctccctcaaCCCCCTGCCCTCGCTGCTGGGCCCCGGGTTTGAGGGCGGAATGGAGGGGGCGCCGGGGCACGGGCCGGCCAGAACCATGCTGGGCCTGCAGAACAGCCCCCAGAACCTGGGCTGGCTGTGGGGGGTGctgcctgtgctgtgtgtgtgggtgctcAGCGGGGTGGGGGCGCTGTGGGGGTGCGTGCGGCTGCTGTACCTGTGGGAGCCCGTCACCCCCCTCCACTCCCCCAAGTCCGTCTCCTTCTGGAGGCACAGGAAGCAGGCCGACATGGAGCTGGCGCGGGGTGACTATCCGGCGGCGGTGGCTAATTTGCAGACCTGCCTGTCAGTCCTGTCCAGGGCACTCCCCTCCACCAACACTGACCTGgcctgctccctctcctggaatGTCATTCGCTACTGCCTGCACAGGCCCGCCCCCATGCGCTGGCTGCTGCGCCTGATTGGAGGCCGgcgcgaggaggaggaggagtccAAGACCAGCGCCAGGGATGCAGCACTGGTCTATCACAGGCTGAACCAGCTGCAGCTCACAGgtaaGCTGGGTGCACGGGGCAGTGTGTGGGGGGTGAGCCTGGCGCTCAGTGCAGTGAACCTGTGTGAGAGTGCCCAGGACAGGGTGCCCCCCACCATGCAGGCTGAGGTCTACGTCACCGCCGCCATCGCCCTGCGTGTCGCCCTGGGGCATAGAATGCGCTGCCTGCCgggttaCCTGCTCAGCTGTGCGGAGACAGTGGCCTGTCAGTCAGAGCCCAGGCTGCTCCCCGATTGGCTGCGCTGGCTCTTCACCCCATTGGGCAGGCAGTTCTTTCTGGGCTGTGATTGGTCAGTGAAGTCAGGAGCCCGAGAGGGATTCTACACCTCTCAGAGAGACCCAGCGGACCCGATCGCCCAGCTGCACCGTGGCTTCTGTGAGAAGCTGCTGGAGAGAGCCGTCCACTCTCTGATCGAACCCGAGTCTGCACCCGACAGCCGCAGGGAGGATTCTGGggagtTCTCTGGTGCCCTGGAGTATCTGCAGTTGTTGAACAGCTGCACAGAGGagcccccttccccctctccccccttccCTGTCCAGGCCAGCCAGCCCCCGTCCCCAGTAGGAGACCCTGTCTGCAGGTGGTGGGCGTCGGTCCTGAAGGCTGCTGTTCATTGGCTGCAGGGCGATGATGCAATGGTGAAGTCACTGCTGGCTGAGGTGGAACGCATGCCCAAGACTCTGCAGAGCCTGGATCACCCCTTGCCCAGGGCGGTGCTGGCACTGTGCCGGGCAGTGCAGCTCAGCGTGGGCACCCCGAGGGGCGAGGCCGTGCCCGCCTGCCTGGCACACTGCGACCGGGCCAGCGGCCACCTATGGGGCGGCATCAACCTGCCACCAACCGAGAGCCGGGCAGGCATCAACAAGGGAGTGGAGCTCTTGGTGTGTGACCTCTTGCTGACCCTGAGGACCAGCCTGTGGCAGCGTGGTGGCGGGGCAAGTGGGGAGCCAGGCCCCGCCTCTGGGTCCCAATTGGCCGGTTTCCAGCGAGATCTGAGCTCCCTGCGCAGACTGGGACAGAGCTACAGGCAGGCCCAGCACAAgCTGTTCCTCCATGAGACATCGGTGAGGCTGATGGCGGGGGCCAGCCCCACCCGCACCCACCAGCTCCTGGAGCACAGCCTGCGCAGAAGGAGCCCCCAGGGCAGCAAGACAGGAGAGGGGGAGTGTGTgctgggggagagggagagagcccAGGCCATTCTGCTTGCCTGCCGCcacctgcccctgcccctgctgCCCCCACCTGGGCACCGTGCCCGCCTGCTGGCCGAAGCGCAGCGCACCCTGGAGAGGGCGGGGGAGCGGCGCCCCCTGCAGGACTGCCAGCACATCCTGCTACGGCTGGGCGGGGGCACCACCATCGCTGCCTCCTAGTGTCCAGACTGCAGAactgcaccacactgcaccTGACGCTCAGTGTgacgcacacactgacacacagacgcactgacacacacacacacacacacacacacacacacacacacacacacacacacacacactcactcacagtgtgtgtgtcagggtgaGTTACTGGGGGACACTGTCTaattctttgtgtgtgtgtgtgtgtgtgtgtgtttttatgtgtcgGCCTGTCAGTGGGACGATCACACTGGGACACAACTGAAAGGGCAGCTTTCTGAGATCTTAATAAAACCACATGGATCAGCAGGAACGAGTCCAAGCGGTGGCTGCAGCACAGGGCAGTTCGGAGTCAACAGGCCTCAGTCACGTACTGAACCACATCTTTCCCTCCAGCATCAGTCAGTCACTGCAGTGCCGTACTGTCCTCTCAGCCTGTTGCACAATGCCATACGGTCTGGctacagcacagagcagcagtCTGTGATTCTGCACAGTTTACAGACCAGTACTGACAGCAGTGTAGTACGGTCTCAGTCCACTCACAGACACCACAGTCCAAATTCTATGTACTAGgtgaaaatatagttttattacTTGGCAATAGTGCAATACCAATAAACTCGAACTCCAGCACCGCGTTCCTAGTGCGGTACAGTAATACATGGCCTGAAACAACACTGTACCTGCAGCTCAAAGCCATACAGACCGGTCACAGTAAAATACAGCGAATGAGTGGCTGCAGTTAAATAAAGAAGTGAGCCACAGCCCAGTGTAGTGCGGAATGGCTGTGGCTCAATACAGGGCTGTCTCCAAATATAGGTGACCTTACAGTACAGGGGTGACACTGCAGTAGAGTTCAGTGCAGTTGACTAGCTCTAGTGCAGGATGCTGGCTGCAGTGCAGGGCAGTACAGCAGACTTTGGCAATACTATAGCACAGTGCTGTCACACTCGATTGGTttcatacagtacagtgctATTCCACACCCATTCCATAAAGAGACCTATTTTGTACACAGGCAGCCAGTGTTTGTATATGACTGTATATAGAGCCGGTGTTAGACACTGTATTCTCTGAGGGAATTAGTCTAGACGTCTCACTTCTCTGTGCTTTATCATGGTAGCTCTGTCTCAGTGActttaattttgctttgttttttttt

Function

NR:

description
PREDICTED: sterol regulatory element-binding protein 2

GO: NA

KEGG:

id description
K09107 SREBP2, SREBF2; sterol regulatory element-binding transcription factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014959 True 4412 mRNA 0.60 18 40912194 40922866

Neighbor

gene id symbol gene type direction distance location
AMCG00014957 NA coding downstream 13494 40886015 ~ 40898700 (-)
AMCG00014950 naga,nagab,LOC102776695 coding downstream 481152 40429382 ~ 40431042 (-)
AMCG00014953 zgc:158803,LOC108258445,LOC105898746,LOC105916152,LOC105012183,LOC107700834 coding downstream 495466 40410874 ~ 40416728 (-)
AMCG00014952 NA coding downstream 513638 40394503 ~ 40398556 (-)
AMCG00014944 sept3,LOC106952311 coding downstream 552492 40348222 ~ 40359702 (-)
AMCG00014962 NA coding upstream 66806 40989672 ~ 40990791 (-)
AMCG00014967 NA coding upstream 255018 41177884 ~ 41226807 (-)
AMCG00014972 polr2f,LOC107727050,LOC107711805 coding upstream 490546 41413412 ~ 41416011 (-)
AMCG00014974 LOC108424764 coding upstream 498995 41421861 ~ 41435628 (-)
AMCG00014973 ddx17,LOC101071115 coding upstream 529577 41452443 ~ 41460863 (-)
G74882 NA non-coding downstream 29771 40882192 ~ 40882423 (-)
G74880 NA non-coding downstream 40200 40871763 ~ 40871994 (-)
G74875 NA non-coding downstream 90039 40821694 ~ 40822155 (-)
G74864 NA non-coding downstream 207587 40703911 ~ 40704607 (-)
G74860 NA non-coding downstream 215953 40695987 ~ 40696241 (-)
G74905 NA non-coding upstream 76987 40999853 ~ 41000652 (-)
G74910 NA non-coding upstream 119232 41042098 ~ 41043583 (-)
G74950 NA non-coding upstream 288173 41211039 ~ 41211311 (-)
G74970 NA non-coding upstream 339902 41262768 ~ 41263907 (-)
G74978 NA non-coding upstream 347061 41269927 ~ 41270183 (-)
AMCG00014958 NA other downstream 2743 40906225 ~ 40909451 (-)
G74870 NA other downstream 128964 40782840 ~ 40783230 (-)
G74862 NA other downstream 213918 40697853 ~ 40698276 (-)
AMCG00014949 ndua6,ndufa6 other downstream 377485 40437259 ~ 40534709 (-)
AMCG00014951 poldip3 other downstream 501417 40401783 ~ 40410777 (-)
G74887 NA other upstream 98 40922964 ~ 40925437 (-)
G74890 NA other upstream 8931 40931797 ~ 40933954 (-)
G74945 NA other upstream 246175 41169041 ~ 41169551 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other upstream 406447 41329313 ~ 41331770 (-)
AMCG00014971 NA other upstream 547428 41470294 ~ 41474481 (-)

Expression


Co-expression Network