AMCG00014969



Basic Information


Item Value
gene id AMCG00014969
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41437580 ~ 41449836 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00014969
TGGCAACCAGATTTGAGGAAGAGAGcgcgagagacagagaaagcagTTCTCGCGAGAGCTGGGCGGCCTCTCCTCGCGAGACTCCACCAGCTGCTGGCGTGGGGAGGATTCCCGCAAGATGGCGGCGCCGCCAGACGAGGAGACCCTGGAGTCACGAATCAACAAGGCCACTAATCCCCTGAACAAAGAGCTGGACTGGGAGAGTGTCCGAGCGTTCTGTGAGCAACTCAACAAGGACCTTGAGGGtcctcAGCTGGCCACCAGGCTGTTGGCCCATAAGATCCAGTCTCCCCAGGAGTGGGAGGCCATGCAGGCTCTGACAGTGTTGGAGACCTGCATGAAGAACTGTGGGAAGCGTTTCCATAGCGAGGTGGGAAAGTTTCGCTTCCTCAACGAGCTCATCAAGGTGGTGTCTCCCAAGTACCTTGGCTCTCGTGCTCCTGAAAAGGTCAAAGGGAAAGTCCTGGAGCTGATGTACAGCTGGACAGTCGGCCTCCCAGACGAGGTCAAGATTGCAGACGCCTATCAGATGCTCAAGAAACAAGGGATTGTGAAGCAGGACCCAGCTCTGCCCGACGACAGGcccctccccccgcccccccccagaCCCAAGAATGCCATCTTTGAGGACGAGGAGAAATCCAagGAGGTCAACAACAACGTGCGCCTGCTGACTGAGCTGCTGGGGGACTACAGTCCAGCACCGTCCCAGCCAAACCCCAATGAAGAGCTCATCAGGGAGTTGTACCAGCGCTGTGAGAAGATGAGGCCCACCCTGTTCCGGCTGGCCAGCGACACGGAGGACAACGACGAGGCCCTGgCCCCGGCGGCCATGCTGAAGCCTGCAGTGACCGCACCCTCACAGGCCCCTCCCCCAGCACAGCCCACGCCCCCCGGCAACAAGGCACTGGAGATGCTGGAGGAGCTGGGGAAGAGTCTCCTGCAGCAGTCACTGCCCCCAGAGGCCCTGCAGGTCAAATGGGACAAGCAGCAGGCCCAGCCCAAGCCCACCCTGAGGGACCTGCAGCACATGTCCGGCCCTGCCCACAGCCCCGCCCCTATCCCGGCCTTCTCTGCCGAGCAGCCTGGGGCTTTCCTGAACTCCCAGCCCAGCCTCGGGACCCTCTCTGTGGGCTCTGCCCAGCCTGCCACCCCTGCCTCCGGCGCCCAGGCTGAGATCTCGCTGGCCAACGTCACTGTACCCCTGGAGTCCATCAAACCCAgcaGTGTGTTGCCGGTGACGGTGTATGACCGGCACAGTCTGCGGGTGCTGTTCCACTTTGCCCGTGACCCCCCGCCGGCGCGGCCGGACGTGCTGGTGGTTGTGATCTCCATGCTGAGCTCGGCCCCTGCCCCGCTGCGCAACATCGTCTTCCAGTCCGCCGTCCCCAAGgtgatGAAAGTGAAGCTGCAGCCCCCATCAGGCACAGAGTTGCCGGCCTTTAACCCCGTCCTGCCCCCCGCCGCCATCACACAAGTGTTGCTGCTGGCCAACCCACACAGGGAGAAGGTGCGGTTGCGGTACAAGCTGTCCTTCACTCTGGGGGATGAGACGTTCAGTGAGATCGGTGATGTGGAGCAGTTCCCCCCCCCGGAGACCTGGGGGAGCCTCTAGGGGGACGGACCAGCGCCAGCACAGCACTTCCTGTCACCTGCTTCCTGCTCCCCCATCCTTCCCCATCGCCCAATTCAgcatctcctctcctctccctcccaccCCCTGGAGCTGTTACtgtcccctcctcctctgtctaTCTCATTGtgggattaatttattttgtcctcCGTTTATTGTTCTGTTCATCTTCTGTGCATTTGTTCGTTTTGCTGCCCACCTCCTTCCCTTCCGACCCTTTAACTGACAGCCCAGTGCAGCACTGTTCAGGCACTACTAACTCTTAAAGGGATCATTTAAATCTGACGAGAGGAAATGAAATGCCTTTTATGTAATGGTCAGCACAcgccccaccccctcccccagtgATTGAATGTGATTGTTGAATgatgtccccccccaccccaagaaCAGTGTCTGTTTCGGACAGCGACTTCCTGTCGTGTCGGAGGCTGTGGAAACGTTGCTCTTTCTGGGAGTCCTGACACAGGAAGTGACCTCATGATCTCCCAGCACTGGGAGGCCACAACGGTTAAGACAATATGTGTTGAGATTTTTATTCAgcgtcaataataataataatactttccTAGAGAGCTGGATATAATAATGGTGGGATTGGTCTGCTTTGTTAAACAGATCGGTTCAGGGAATAGAATATAATaagaatcatttaaaatggcagcggagagaaataaataaaccaaaacaagtACGGCAATAAATCAAACCAGCTCGCCAGATTccgtttgtgtgcgtgtgcgtgtgcgtgtgcgctcTACTGTTGTCGTGTCCTGGCGTTTCTGGGATGCAGAACTTGGGCTCGAGCGACAGAAAGATAGGCAGAGCAAGTGAGACGGGGTGGAGGGCcgctgtgtgtgggtgtgagggGGGCAGCCCTGTGGACAGTCCATTCGTGTATTTATTGCTGCCAGTGCTGCATCAGCTTGCGTTTAAAAATAAGCTGACTCTGGATGGGGAGATAGAGGGAGGCACAGACTGAACATGCCTTTGGAGACATTTATTTGCACAAgaaatcaaaatggaaaaataccttctcctttttccccccacttccTCCCCCAGACTCTAGACACTAGTGGGAGACCCTGAAGTCTTACTGACACCCCATTGCCAACTGTGCCTCTTCTGacaatttagctttttttttttttttggtggtgtttgttctgttcagatgtatatattgtattcagtggTGACTGACTCATTGGTGTGGGTGTcctctatctctgtctgtctgtctgtctgtctggggtTCAGTCAGTTCACTGAGATAATAGACTGCTTGAAATGTTGGGGCAAGAAaagttatacaaaataatagatCCACTTGTTTAAAAGCCATGGTAGTAGGTGGGATCCCCACATCACCCTGCTCCTGCCCACCATGCCGGTCCTGCTGGCACCTCTTCCAGCTCCGGCTCCCAGTTACTCTACCAAACTGCAGTCAGCATGTGATGTTTCAGTATTTCCTAAGTAGTggggaaggggagagaaaaaCGCTACCAGGGCAGTTGAATTGTGCAGCTCGTGAGCACGAGGGCATTGAGAGTGAAATGCAGCTGAAACGAggtgtttggttttgttcaaGCCAATCCCAGCACGCTGTTCCCCAAATCAGCCGGGCCAGGGGAACATGAGAACCTCTGGCTTAAAGGACCAGCGCCGGGAACCGCCACGGCCTGGAGCTCCGAGCCTCTGGGGGAGGAGCTGATTTTGCCACGAAGATCTGTGGTCTTGAACAGTTTCTTTACACTGGATGGTTTTCCAGCTGGGGAGGTGGACCTGGTTTTTAACTGAATGTCTATTCCCCTCCCCACTTTCTTCAACCCGGTTTGACTCTCGAGTCCGAGGCTCCATGCATGACCAGGAGAGAAGCTGCTGCCCTCATTCCGGTTGAGTTGGACCAGGTAGCTCAGCGGGAGCCCAGTGGACTGGTGTGGGGAGATTGGAACTGAAGCCCATAAGACCCTGTGGCCCCCTTTGGGAATGGAGTGTGTTTTCAGCCCTCTGCTAGAAGTGGGAGCGGGGAGGGGACGCTGTGGTCCTCCAGGCCCAGGGAGGGAGAGTAGCAGTGGGTCAGAACCTCTCCAGAAGAATGTATTTGGAATTACTGTAATAGCTTTTGCTGTATTTTGACCGACTTCCACCAACTAGATTTCTATCACTTGTCAAACTGTACCCCCCCCTCCAGACACCTCTCTCCCCAGGATGCTGCAGATGAAGACTGATCCTCAGCAATACACACTAACGCTCGCTCACCCCCCGGTCCTCCGCAATTCCAACTCTATGACTTTGTCAATGTATATATCGGTATTTGCAAATTCTGTacatcaaccaaaaaaaaaacttaaaaga

Function


GO: NA

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00014969 True 3997 mRNA 0.55 13 41437580 41449836

Neighbor


gene id symbol gene type direction distance location
AMCG00014965 NA coding upstream 73038 41363157 ~ 41364542 (+)
AMCG00014966 NA coding upstream 125562 41303808 ~ 41312018 (+)
AMCG00014960 NA coding upstream 396189 41037030 ~ 41041391 (+)
AMCG00014961 NA coding upstream 401808 41015868 ~ 41035772 (+)
AMCG00014955 NA coding upstream 677670 40745696 ~ 40759910 (+)
AMCG00014976 NA coding downstream 86276 41536112 ~ 41551039 (+)
AMCG00014979 maff,LOC107734233,LOC107690056,LOC107554043,LOC107584105,LOC107692071,LOC107731405,LOC106589545 coding downstream 216942 41666778 ~ 41670067 (+)
AMCG00014986 NA coding downstream 361335 41811171 ~ 41813199 (+)
AMCG00014995 NA coding downstream 482682 41932518 ~ 41934438 (+)
AMCG00014988 pick1,LOC107572282 coding downstream 520828 41970664 ~ 41978667 (+)
G74980 NA non-coding upstream 164482 41271764 ~ 41273098 (+)
G74977 NA non-coding upstream 167112 41269927 ~ 41270468 (+)
G74973 NA non-coding upstream 170578 41266319 ~ 41267002 (+)
G74944 NA non-coding upstream 267968 41169211 ~ 41169612 (+)
G74942 NA non-coding upstream 269227 41168076 ~ 41168353 (+)
G75049 NA non-coding downstream 264 41450100 ~ 41451333 (+)
G75099 NA non-coding downstream 212318 41662154 ~ 41665444 (+)
G75115 NA non-coding downstream 251785 41701621 ~ 41785740 (+)
G75117 NA non-coding downstream 254612 41704448 ~ 41705102 (+)
G75140 zmp:0000000896 non-coding downstream 339625 41789461 ~ 41789825 (+)
AMCG00014970 NA other upstream 15324 41418653 ~ 41422256 (+)
AMCG00014968 sox10,LOC107674484,LOC107711804,LOC107563722 other upstream 31828 41393504 ~ 41405752 (+)
AMCG00014963 kdelr3,LOC106601218,LOC108262534 other upstream 97420 41334486 ~ 41340160 (+)
G74952 NA other upstream 222338 41213950 ~ 41215242 (+)
G74925 NA other upstream 346968 41089775 ~ 41090612 (+)
G75052 NA other downstream 2607 41452443 ~ 41457150 (+)
G75067 NA other downstream 21377 41471213 ~ 41482573 (+)
AMCG00014980 LOC108431982 other downstream 321036 41770872 ~ 41774135 (+)
AMCG00015004 phf5a,PHF5A,LOC102780084,LOC107584099,LOC106609350 other downstream 648032 42097868 ~ 42100480 (+)
AMCG00015014 rbx1 other downstream 768818 42218654 ~ 42228135 (+)

Expression



Co-expression Network