AMCG00014972 (polr2f,LOC107727050,LOC107711805)


Basic Information

Item Value
gene id AMCG00014972
gene name polr2f,LOC107727050,LOC107711805
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41413412 ~ 41416011 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014972
ACGTTGTCTGTAGCGGAAGACGGCAgcgtgttgtgtttgtgtgctggtGGCGCACATTGTTGGTTGTGGTTAAGACTGACCCAGAGCCGGTCCGGACCAGCGACAATGTCGGACAACGAGGACAATTTCGATGATGGAGATTTTGATGACGCCGAGGAGGATGAAGGGCTGGATGATCTGGAGAACGCAGAGGACGAGGACCAGGACAACGTGCAGATCCTGCCAGCAGGGGAGGGTCAGCAGGCCAACCAGAAGCGCATCACCACCTCCTACATGACCAAATACGAGAGGGCGCGCGTCCTGGGCACCCGGGCCCTGCAGAtagcgatGTGTGCTCCAGTGATGGTGGAGCTGGAAGGAGAGACAGACCCGCTGCAGATCGCCATGAAGGAGCTCAAGAGCAGAAAGATACCGATCATCATCAGACGCTACCTCCCGGATGGCAGCTACGAGGACTGGGGCTGTGATGAGCTCATCATCACCGACTGACAGCCCAGGCTGGTGTGGGAGCTGGCCTGTGCTCCCCTGCCTCCATCCGTGACCCACATCTCCTCAGCATCACTCAAAACTTGTGCCCAGCTGTGCCGTGTCTCTGTGCTGTACAGTGGGACATCGTTTTCCCACTCAGGGGTGCATTTACACCATTTTGACACAAGCGGGCGCCAACATGCAGCATTTAAACATCAAATCCCAGCAGCGTGTGAACTGCAGGCGTCCCGTTGACAGAAGTGACAAATCTTCACCGACCAGAGATCTGAAATCACACCATCcaccctttatttattttcatttttctgagggttgattttaatttttgtaataaaaaagtaagaaaatagggtactttgttttctgtaaaaaaacaaccaataaaatattgttaaaccCAA

Function

symbol description
polr2f Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2F (RNA polymerase II, I and III subunit F).

NR:

description
DNA-directed RNA polymerases I, II, and III subunit RPABC2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03014 RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014972 True 890 mRNA 0.52 5 41413412 41416011

Neighbor

gene id symbol gene type direction distance location
AMCG00014967 NA coding downstream 186605 41177884 ~ 41226807 (-)
AMCG00014962 NA coding downstream 422621 40989672 ~ 40990791 (-)
AMCG00014959 LOC107676178 coding downstream 490546 40912194 ~ 40922866 (-)
AMCG00014957 NA coding downstream 514712 40886015 ~ 40898700 (-)
AMCG00014950 naga,nagab,LOC102776695 coding downstream 982370 40429382 ~ 40431042 (-)
AMCG00014974 LOC108424764 coding upstream 5850 41421861 ~ 41435628 (-)
AMCG00014973 ddx17,LOC101071115 coding upstream 36432 41452443 ~ 41460863 (-)
AMCG00014975 dmc1 coding upstream 47583 41463594 ~ 41469552 (-)
AMCG00014977 NA coding upstream 72878 41488889 ~ 41515465 (-)
AMCG00014984 NA coding upstream 258773 41674784 ~ 41687445 (-)
G75035 NA non-coding downstream 3800 41406917 ~ 41409612 (-)
G75032 sox10,LOC106607141,LOC106601158,LOC107104518 non-coding downstream 7613 41405462 ~ 41405799 (-)
G74978 NA non-coding downstream 143229 41269927 ~ 41270183 (-)
G74970 NA non-coding downstream 149505 41262768 ~ 41263907 (-)
G74950 NA non-coding downstream 202101 41211039 ~ 41211311 (-)
G75064 NA non-coding upstream 34079 41450090 ~ 41451333 (-)
G75145 NA non-coding upstream 235325 41651336 ~ 41673042 (-)
G75144 NA non-coding upstream 254145 41670156 ~ 41672310 (-)
G75170 NA non-coding upstream 396322 41812333 ~ 41815261 (-)
G75241 NA non-coding upstream 561744 41977755 ~ 41991977 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other downstream 81642 41329313 ~ 41331770 (-)
G74945 NA other downstream 243861 41169041 ~ 41169551 (-)
G74890 NA other downstream 479458 40931797 ~ 40933954 (-)
G74887 NA other downstream 487975 40922964 ~ 40925437 (-)
AMCG00014958 NA other downstream 503961 40906225 ~ 40909451 (-)
AMCG00014971 NA other upstream 54283 41470294 ~ 41474481 (-)
AMCG00014978 NA other upstream 122275 41538286 ~ 41561967 (-)
AMCG00014981 NA other upstream 339595 41755606 ~ 41766826 (-)
AMCG00015010 csdc2,csdc2a,LOC105919973,LOC108235856,LOC103382071,LOC101165181 other upstream 644279 42060290 ~ 42063901 (-)
G75272 LOC105025081,LOC108431941,LOC108274116,LOC107734154 other upstream 703276 42119287 ~ 42131232 (-)

Expression


Co-expression Network