AMCG00014996


Basic Information

Item Value
gene id AMCG00014996
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42005173 ~ 42009313 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014996
CCTCACCCcttcttctctgtctttctctcctgaGCTAGATGTGAGTAAGTGTGCGTGCTGGCCTGCTGTGTGCGGGTtgcagtgagagagacagagagagagtgcactATGACATGTAAACAAGGATACAAGTGGGACGATTTGGTGAATGACTGCATCCAGGAGGCAAAGACCAATGGACCTGGGAGGAGGCTAGACTGTCTACCCGGAGAAGTCTGGGAAAACCTACTCAACGAGTGCATCTCCAAAACGGACGCACACACTACTGTCCGAGGGCCAGTGTTGAGTGCCAGTGGAGGGGTCCTGCCTGGTGGGGGGGCTGCAGGGGGTGCCAAGGCCTGGGAGCTGGGCCCAGCAGTGTGGGGCGGTTTGTCTGGCCAGACAGGTCTGAGAGAGACCCCCACAGCAGAGGAAGACGACACCTCAGAATCCTGTAGGCACGTCTACAGGGCTTCCCCAGGAACCAACCTGCAGGAACCTTGTGTCTCAGGCTCCTTGGCCTGGGCGGAGGAGATTGAGCACGGCGCTGGGGAAGAGCTGTCCAGTGTCCATCTGTGCAACGGCAGGCAGGACCACAGCTTCCCACTTCCTGCCACTGAGCTGGGAGGCGCCACCCTGGTCACCACCAAGACAGTGCAGTGTGCCTGAggaggggtcagaggtcaacgGGTACAGTGAGCGTGAGGAGTAAAAAATTAAAGAGACATAAACATCAAATATTGCCAAACAATTAGGTTAAGGGCTCATATTTGTATACAATGGGCCAAAATAAGgttcagattaaaaaacaaaaaaagtgtcaaaATAAGGGTCAGAgatcaagatttatttttttaagtaccaAAATGGAGGTGTGATCTTTACTGGTGTCTTTTgactgtctttgtgtgtgtgtttgtgagcctgtgtgtattttgtatgcttatttgtatttgttttgagggtttcattttttgtatttatatattttttttctttctttcaatccATTAATGCCCTGGGCGTGAAATAGTTAATCTGAACGCACCGCAAAGAAACCGTTGTATTTTGGGTAACAGATTAACTGAAATAACGACCAATGTACAGAGCGATTGTACTGCAAGGCGGCAGGTCTCCACCAGGTGCCAGTGTTCGCCGCCGAATTCAGCTTGTCCAAACAAAGTGTCCAGTTCAGACATTCTAATCTATAGGAAGTTCAAAATGATCACATTATTTGtagactttttatttatttttatttaaacagctattctggttattattagtattactatcAGTATTAGTGTTAGtatcaattttaatatattattaagtATTAGTCATACTTTCTGTTTCCCAAGGAGactgagttaaaaaaaaaaaaatgcaatatgatgttttaaattagtattattactcataaataaaataaccaaagaGCCAGAAGGCCTCGGAACTAACAGAGTGTGATGTTCACACACTGTAGTACAATTtgttgtactttattattattattatgactagtATGAAAGTTATTTAGCAGAGACATacataaagacaaaaacagttaaaaaagaCTATGCAAAGTAATTAATGTGCATATTACTGtgaattaaaaagtatatacaaatgagctgcaaataataataataatgataataataataacaacagacaACTTTTATATTAGACTGTGTTTTTGACTGTACTGCCATTTTAGAAATCATGTATTATTGaagctgc

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014996 True 1722 mRNA 0.42 4 42005173 42009313

Neighbor

gene id symbol gene type direction distance location
AMCG00014999 NA coding upstream 4210 41991198 ~ 42000963 (+)
AMCG00014988 pick1,LOC107572282 coding upstream 26506 41970664 ~ 41978667 (+)
AMCG00014995 NA coding upstream 70735 41932518 ~ 41934438 (+)
AMCG00014986 NA coding upstream 191974 41811171 ~ 41813199 (+)
AMCG00014979 maff,LOC107734233,LOC107690056,LOC107554043,LOC107584105,LOC107692071,LOC107731405,LOC106589545 coding upstream 335106 41666778 ~ 41670067 (+)
AMCG00014997 kcd17,LOC105025089 coding downstream 3649 42012962 ~ 42020861 (+)
AMCG00014998 NA coding downstream 39597 42048910 ~ 42058413 (+)
AMCG00015000 NA coding downstream 60362 42069675 ~ 42076595 (+)
AMCG00015002 NA coding downstream 91709 42101022 ~ 42105812 (+)
AMCG00015005 LOC106607164 coding downstream 147915 42157228 ~ 42170634 (+)
G75186 NA non-coding upstream 36241 41967903 ~ 41968932 (+)
G75174 NA non-coding upstream 115295 41889139 ~ 41889878 (+)
G75171 pdap1a,LOC107584100,LOC107690063,LOC107734239,LOC108431950,LOC103027934 non-coding upstream 158504 41844456 ~ 41846669 (+)
G75142 NA non-coding upstream 208972 41795973 ~ 41796201 (+)
G75141 NA non-coding upstream 214050 41790726 ~ 41791123 (+)
G75213 aco2,LOC107554054,LOC107663183,LOC107734200,LOC107584097,LOC107692062 non-coding downstream 73820 42083133 ~ 42088458 (+)
G75284 NA non-coding downstream 205281 42214594 ~ 42216524 (+)
G75293 josd1,LOC107660868 non-coding downstream 303367 42312680 ~ 42320118 (+)
G75294 NA non-coding downstream 308557 42317870 ~ 42318316 (+)
G75297 NA non-coding downstream 316870 42326183 ~ 42327614 (+)
AMCG00014980 LOC108431982 other upstream 231038 41770872 ~ 41774135 (+)
G75067 NA other upstream 522600 41471213 ~ 41482573 (+)
G75052 NA other upstream 548023 41452443 ~ 41457150 (+)
AMCG00014970 NA other upstream 582917 41418653 ~ 41422256 (+)
AMCG00014968 sox10,LOC107674484,LOC107711804,LOC107563722 other upstream 599421 41393504 ~ 41405752 (+)
AMCG00015004 phf5a,PHF5A,LOC102780084,LOC107584099,LOC106609350 other downstream 88555 42097868 ~ 42100480 (+)
AMCG00015014 rbx1 other downstream 209341 42218654 ~ 42228135 (+)
G75295 NA other downstream 380556 42389869 ~ 42405188 (+)
AMCG00015030 NA other downstream 416141 42425454 ~ 42475884 (+)
AMCG00015032 NA other downstream 617820 42627133 ~ 42629493 (+)

Expression


Co-expression Network