AMCG00014999


Basic Information

Item Value
gene id AMCG00014999
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41991198 ~ 42000963 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014999
GTGTAAAGAAAATCCATGCTTGCCCAGTCCTCCAATCACAGCCCCGGGCTTGTCCGCCTCCAccaatgaagagagagagaactttgGGACTTTTCCTTACATAAGATGCCAACCAAAACAGCCAGGTTTCACTTCACTAGTGTCGGAGATATAGCGGGCTGACATTTGAAGAGGGAGTTTAAGGAGAGGGGAGGAACTCTTcataattcgtttttttttaattaatattagtttGCTCCATGTTGTGTTCGGGAATGGCGCGGTGGTTCTTCGTGTTGTTCCTCTTTGCCGTGTACGTGAGGGTCGGACGAACGTACAAGCTCCTGAAAGCCACAGTGTACTGGGACCCTGATCACAAGGCTGTGAATCTGAAGGAGGGGGTGATGGAGCTGGGGGGCGATGCCTATGGTTACTATAATGACAGCCTTTTGGAGAGTGGCTGGGGTGTCCTGGAGCTCCGGGCAGGGTATGGCGAATCCCCCAAGTCTGATTCAGTCAATTCCTTCCTGTCTGGATACCTGGAAGGCTACCTGACAGCTCCGCAGATGTTCAGCCACTACACCAACATGTACCCTAATGTGATCAAGGACCCCAAGGTGCTGCCCCTAGTTCAGAAGTTCATAAGtgagcAGGACAGCTGGGCACGGGGGCAGcctctcTCAGTGTTTGCTGTGCAGTTTATCAATGCTTTGGGGGACTTGCTGGACTTGATCCCCGCCCTGGTACCTGACCCCCCCTCGGACCCCCTCACTCTTCTCAGATACCCCGGCCAGCCAGCAATGGGCCACTGCTCAGCCCTCATCAAGGTGTTGCCTGGCTTTGAGAACCTGCTGATGTCCCATTCCAGCTGGTACACCTACGCTGCCACCCTGCGCATCTACAAGCACTGGGACCTGCGGTTGACCGACCCCAGCATCGCCACGGGCAAGCTGTCCTTCAGCAGCTACCCTGGCTCCCTGGTGTCTATGGATGACTTCTACTTGCTGGGCAGTGGTCTGGTGATGCTCCAGACCACCAACAGCATCTTCAACCGCACACTGTACCAACTGGTGACCCCCCAAAGTCTGCTGGCCTGGCAGAGGGTGCGGCTGGCACATGCCCTGGCCCGGGACGGCCAGCAGTGGGCAGAGGTCTTTGCACGCTACAACTCTGGCACCTATAATAATCAATACATGGTGGTGGATCTGAACAGGGTGTTTCTGGGCAGCCGGCTGGAGGACGGCGCTCTGATTATCGTGGAGCAGATCCCTGGGCTTCAGCGCTGGGGGGACCAGTTCTCCTACGAGCTGTGTGCCCGTGCCAAGATCCTGCGCCGTGACCAGGGCTCCGTCAACGACCTGCCCACTCTCAAGCATGCCATGAGATACAACGATTATAAACATGACCCCTACTCTGAAGGGAACCCCTGTCTTAGCATCTGCTGCCGGAATGACCTCCAATCAGAGCGCCCGTCTCCCGGCGGTTGCTATGACACCAAGGTGACTGATTTCTTCATGGCCCAGCGCTTTGTGTCGGAGGCCATCAATGGGCCAACGATGGAGGGAGGGCTGCCCCCTTTCTCCTGGGACAAGTTCAACCGCACCGTGCACCAGGGCCTGCCCAGAGTCTACAATTTCAGCTTTGTGAGCATGCAGCCTGTCCTGTTCAAACCCTGAGGGAAACTGGGAGGGAAGCAGGGAGAAGAAGGGATGGCATAGGGAATATTTGGAAACCAAACTAAAAGTAACCCCACTGCACAACACCCAGCATACAAGGGAGCAGGCACCAACATTCAGGGCCTAGTGTGTATGGTGCAGTTTTAACTCCTAATACAGTAGATGGATGTAGCtacttctgtgtttttataattgATTCCTAAGAATAATTTACCTATTTAAGTGCTTTAACACAATGACTTtgtgcttttcaattatttataatgaattcTAATTGGCACTGACCCTCTCCAGAATGTTCTAGAATCCGTCCTGGGGGACATTCTTGCACTTCCTTcagcaattacatatttttgcagATATTTGTGAATTATGTCTGAAATTCACTCAGGGCTCTAcagttgtgatttttttttttttttttttttggcattctCATGGCTTTTggatttctttatatttttatatgagtGGGGAGAATTAGTAAATTCGTTTGAACCtgttggattaaaaaaaaaaaatctgtgtttcaAAAATTGCTCTTGTATGTCaaaaaatcaatgaataaacTTGAATTATG

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014999 True 2235 mRNA 0.50 11 41991198 42000963

Neighbor

gene id symbol gene type direction distance location
AMCG00014988 pick1,LOC107572282 coding upstream 12531 41970664 ~ 41978667 (+)
AMCG00014995 NA coding upstream 56760 41932518 ~ 41934438 (+)
AMCG00014986 NA coding upstream 177999 41811171 ~ 41813199 (+)
AMCG00014979 maff,LOC107734233,LOC107690056,LOC107554043,LOC107584105,LOC107692071,LOC107731405,LOC106589545 coding upstream 321131 41666778 ~ 41670067 (+)
AMCG00014976 NA coding upstream 440159 41536112 ~ 41551039 (+)
AMCG00014996 NA coding downstream 4210 42005173 ~ 42009313 (+)
AMCG00014997 kcd17,LOC105025089 coding downstream 11999 42012962 ~ 42020861 (+)
AMCG00014998 NA coding downstream 47947 42048910 ~ 42058413 (+)
AMCG00015000 NA coding downstream 68712 42069675 ~ 42076595 (+)
AMCG00015002 NA coding downstream 100059 42101022 ~ 42105812 (+)
G75186 NA non-coding upstream 22266 41967903 ~ 41968932 (+)
G75174 NA non-coding upstream 101320 41889139 ~ 41889878 (+)
G75171 pdap1a,LOC107584100,LOC107690063,LOC107734239,LOC108431950,LOC103027934 non-coding upstream 144529 41844456 ~ 41846669 (+)
G75142 NA non-coding upstream 194997 41795973 ~ 41796201 (+)
G75141 NA non-coding upstream 200075 41790726 ~ 41791123 (+)
G75213 aco2,LOC107554054,LOC107663183,LOC107734200,LOC107584097,LOC107692062 non-coding downstream 82170 42083133 ~ 42088458 (+)
G75284 NA non-coding downstream 213631 42214594 ~ 42216524 (+)
G75293 josd1,LOC107660868 non-coding downstream 311717 42312680 ~ 42320118 (+)
G75294 NA non-coding downstream 316907 42317870 ~ 42318316 (+)
G75297 NA non-coding downstream 325220 42326183 ~ 42327614 (+)
AMCG00014980 LOC108431982 other upstream 217063 41770872 ~ 41774135 (+)
G75067 NA other upstream 508625 41471213 ~ 41482573 (+)
G75052 NA other upstream 534048 41452443 ~ 41457150 (+)
AMCG00014970 NA other upstream 568942 41418653 ~ 41422256 (+)
AMCG00014968 sox10,LOC107674484,LOC107711804,LOC107563722 other upstream 585446 41393504 ~ 41405752 (+)
AMCG00015004 phf5a,PHF5A,LOC102780084,LOC107584099,LOC106609350 other downstream 96905 42097868 ~ 42100480 (+)
AMCG00015014 rbx1 other downstream 217691 42218654 ~ 42228135 (+)
G75295 NA other downstream 388906 42389869 ~ 42405188 (+)
AMCG00015030 NA other downstream 424491 42425454 ~ 42475884 (+)
AMCG00015032 NA other downstream 626170 42627133 ~ 42629493 (+)

Expression


Co-expression Network