AMCG00015010 (csdc2,csdc2a,LOC105919973,LOC108235856,LOC103382071,LOC101165181)


Basic Information

Item Value
gene id AMCG00015010
gene name csdc2,csdc2a,LOC105919973,LOC108235856,LOC103382071,LOC101165181
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42060290 ~ 42063901 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015010
ATGGATAGGACGGCGCGGGCAGCAGTGGGGCCAGTGTACAAGGGCGTTTGCAAGAACTTCTCCAGGTCGCAGGGTCACGGCTACATCACCCCCTCCCAGGGTGGGGAGGACATCTTCGTACACATCTCAGAcaTTGAGGGGGAGTATGTGCCCATCGAAGGGGACGAGGTGACGTATAAGGTGTGTCCGGTCCCCCCTAAGAACCAGAAGATCCAGGCAGTGGAGGTGGTGATCACACACCTCACCCCAGGCACGAAGCACGAGACCTGGACTGGGCAGATAATCAGCTCCTAGGCTTCAGTTGCAGGGCCTAGTGCTGCAGTGGCTGGGGTGAGGGAGGGGGGTAGAGGGAGCTGGGGGAGGGATAGATAAAGTATGAAGAGGGAGGGATGCGAGGAAAGTGTGGTGCAGATTGTAG
>TU93955
TTTCGTGTGTGGACTTGAGTGGATTCCAGCGCTTCCCCACAGACTGTAAACACAGACCCGGAGAGCCCACTCCCATCGGCGGGATCGGTCCTCTCACACTCACTGTATTGATCGCTCATTTCAGTCACGCAAGGACGTCCTCGCCGCCCATCTTTCCACTGACTCCCGCGTCGCCCGGCTACGGACGGCGCGGGCAGCAGTGGGGCCAGTGTACAAGGGCGTTTGCAAGAACTTCTCCAGGTCGCAGGGTCACGGCTACATCACCCCCTCCCAGGGTGGGGAGGACATCTTCGTACACATCTCAGAcaTTGAGGGGGAGTATGTGCCCATCGAAGGGGACGAGGTGACGTATAAGGTGTGTCCGGTCCCCCCTAAGAACCAGAAGATCCAGGCAGTGGAGGTGGTGATCACACACCTCACCCCAGGCACGAAGCACGAGACCTGGACTGGGCAGATAATCAGCTCCTAGGCTTCAGTTGCAGGGCCTAGTGCTGCAGTGGCTGGG

Function

symbol description
csdc2a Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to be active in cytoplasm. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human CSDC2 (cold shock domain containing C2).
csdc2 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: cold shock domain-containing protein C2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015010 False 418 mRNA 0.59 3 42060290 42062894
TU93955 True 505 lncRNA 0.60 3 42060378 42063901

Neighbor

gene id symbol gene type direction distance location
AMCG00015001 NA coding downstream 22090 42023102 ~ 42038200 (-)
AMCG00014990 NA coding downstream 71583 41985975 ~ 41988707 (-)
AMCG00014989 NA coding downstream 77491 41979321 ~ 41982799 (-)
AMCG00014991 NA coding downstream 91578 41966064 ~ 41968712 (-)
AMCG00014992 LOC107591697,LOC107720054,LOC102309547 coding downstream 210521 41845859 ~ 41849769 (-)
AMCG00015008 NA coding upstream 96 42063997 ~ 42070963 (-)
AMCG00015007 aco2,LOC107554054,LOC107692062,LOC107584097,LOC107734200,LOC107731401,LOC103370792 coding upstream 19143 42083044 ~ 42097284 (-)
AMCG00015006 tef,LOC101073097 coding upstream 42996 42106897 ~ 42112141 (-)
AMCG00015012 NA coding upstream 57762 42121663 ~ 42123872 (-)
AMCG00015011 NA coding upstream 66144 42130045 ~ 42134449 (-)
G75247 NA non-coding downstream 38209 41993563 ~ 42022081 (-)
G75241 NA non-coding downstream 68313 41977755 ~ 41991977 (-)
G75170 NA non-coding downstream 245029 41812333 ~ 41815261 (-)
G75145 NA non-coding downstream 387248 41651336 ~ 41673042 (-)
G75144 NA non-coding downstream 387980 41670156 ~ 41672310 (-)
G75333 NA non-coding upstream 103623 42167524 ~ 42167876 (-)
G75364 NA non-coding upstream 222393 42286294 ~ 42286584 (-)
G75365 NA non-coding upstream 222757 42286658 ~ 42286893 (-)
G75367 NA non-coding upstream 225288 42289189 ~ 42289415 (-)
G75368 NA non-coding upstream 225689 42289590 ~ 42289858 (-)
AMCG00014981 NA other downstream 293464 41755606 ~ 41766826 (-)
AMCG00014978 NA other downstream 498323 41538286 ~ 41561967 (-)
AMCG00014971 NA other downstream 585809 41470294 ~ 41474481 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other downstream 728520 41329313 ~ 41331770 (-)
G74945 NA other downstream 890739 41169041 ~ 41169551 (-)
G75272 LOC105025081,LOC108431941,LOC108274116,LOC107734154 other upstream 55386 42119287 ~ 42131232 (-)
G75370 NA other upstream 228020 42291921 ~ 42292295 (-)
AMCG00015023 NA other upstream 257195 42321096 ~ 42325005 (-)
AMCG00015031 NA other upstream 444968 42508869 ~ 42521901 (-)
AMCG00015028 NA other upstream 459431 42523332 ~ 42534278 (-)

Expression


Co-expression Network