AMCG00015030


Basic Information

Item Value
gene id AMCG00015030
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42425454 ~ 42475884 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015030
ATGGGCAGAAGGGGATGGAAGGAGCAGGacgaggagaggaggaggaggagaagaaggaggaagaagaggagaatTGGAGCAGGGGAGAAGAGACAGACTGGCTCGGAGGGCAGTAGTGACTGTCCTGAGTATTCTACTCCTGGTCACTGTGCTGGAGCTGAGGGAGATCCAGTCAGCTCTGGGAAGCTCTTTCCTCCTGGCTCTGATGGGAAAACAACCATCCAGATTGCGACAGGCCCAGGCCAGGAATTCTCCCCCCAGGCGATCGTGCAGCTGATTCAGGCAGTGGGCCGGCGCTGGGAGCAGTACAGCACTCGGGAGCGGGGGCGGCTGTTCCAGGGCGTGCAAGAGGAGCTGGCCCAAAACGGCCAGGCCTTCCCCCTCGAGCGCATCCGCCGCAAGTGGAACAACCTGCTGGTCACCTACAAGAGGGTGCATGAGCGCGCACGCTACACCGGCCAGCACAAGACCACCTGGGAGTACTACGAGatGATGGATGCCTTGCTGAGTGGCTCCTCGAAATCCCAGGGCAGAGAGGGCACCATGGCCGCCATGGCCACCACGACAAACGCAGCCCTCTCCCTGGCTGTCTCCAGCTGCCTCCTGCCAGGGTCCCTCCCCACATCCCTCCTCACCTTGCCCTCCCTGCTCCCATCCCTGCTCCCCTCCCCCCGCTCCTGCCCCCCCCAGGCCCTCCcatcctcccctctctctccgcccccccccccaccttcctcCTCCATCAACCCAGACCCCCCAAACCCAGCACCCCAGCCCCCAGCCTCGGCCTTGACCTCACCCCCCCCTCAAGAGGGCCCCAGCTCCCTCACCCGGCCCCGCCGCCTGGCCCCCCGCCTCCGGGAGCAAGCGGTATAA
>TU94030
AGGGGAGGGGGGTACCCCCAAGCTAATGATGCTGCCCCAGCCAGCACAAGACACGGGCCCAGGCCAGGAATTCTCCCCCCAGGCGATCGTGCAGCTGATTCAGGCAGTGGGCCGGCGCTGGGAGCAGTACAGCACTCGGGAGCGGGGGCGGCTGTTCCAGGGCGTGCAAGAGGAGCTGGCCCAAAACGGCCAGGCCTTCCCCCTCGAGCGCATCCGCCGCAAGTGGAACAACCTGCTGGTCACCTACAAGAGGGTGCATGAGCGCGCACGCTACACCGGCCAGCACAAGACCACCTGGGAGTACTACGAGatGATGGATGCCTTGCTGAGTGGCTCCTCGAAATCCCAGGGCAGAGAGGGCACCATGGCCGCCATGGCCACCACGACAAACGCAGCCCTCTCCCTGGCTGTCTCCAGCTGCCTCCTGCCAGGGTCCCTCCCCACATCCCTCCTCACCTTGCCCTCCCTGCTCCCATCCCTGCTCCCCTCCCCCCGCTCCTGCC
>TU94031
ccaccccccccccccccccccccccccccccccccccCCCCCAAGCTAATGATGCTGCCCCAGCCAGCACAAGACACGGGCCCAGGCCAGGAATTCTCCCCCCAGGCGATCGTGCAGCTGATTCAGGCAGTGGGCCGGCGCTGGGAGCAGTACAGCACTCGGGAGCGGGGGCGGCTGTTCCAGGGCGTGCAAGAGGAGCTGGCCCAAAACGGCCAGGCCTTCCCCCTCGAGCGCATCCGCCGCAAGTGGAACAACCTGCTGGTCACCTACAAGAGGGTGCATGAGCGCGCACGCTACACCGGCCAGCACAAGACCACCTGGGAGTACTACGAGatGATGGATGCCTTGCTGAGTGGCTCCTCGAAATCCCAGGGCAGAGAGGGCACCATGGCCGCCATGGCCACCACGACAAACGCAGCCCTCTCCCTGGCTGTCTCCAGCTGCCTCCTGCCAGGGTCCCTCCCCACATCCCTCCTCACCTTGCCCTCCCTGCTCCCATCCCTGCTCCCCTCCCCCCGCTCCTGCC
>TU94048
GTCAGTCTGCAGGTATGTCGCCCAGCAGGCTAAGCCACAACCCACTGCAGGCaatcacagaataacacagcacagcactggaACGACacacagcaagagagagagcagaggagacagaggaagagagtgGAGGGCTGCGCTGTCCCCTTCACAGGTCTGGAAGACTAGATTGCTCCTCCGACTAGAGAGGTGAATCCCTTCATCCTGTagcccgagagagagagagaagggaggagagaTTAGGAGGAGAATGCCGAAGaagagagaacagcagagaggaggaggaggaggaggcatgGGGGAGGGCTCCTCCTGCAGACAGATAGAAGGGAAGAAGACATGGGCAGAAGGGGATGGAAGGAGCAGGacgaggagaggaggaggaggagaagaaggaggaagaagaggagaatTGGAGCAGGGGAGAAGAGACAGACTGGCTCGGAGGGCAGTAGTGACTGTCCTGAGTATTCTACTCCTGGTCACTGTGCTGGAGCTGAGGGAGGTGTGGGCAGGGACAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015030 True 876 mRNA 0.65 5 42465367 42475884
TU94030 False 503 TUCP 0.66 3 42468677 42473091
TU94031 False 526 TUCP 0.68 4 42425454 42473091
TU94048 False 524 TUCP 0.56 2 42464637 42465551

Neighbor

gene id symbol gene type direction distance location
AMCG00015018 LOC108273026 coding upstream 78675 42337369 ~ 42346779 (+)
AMCG00015019 ep300,LOC100700725,LOC106607167 coding upstream 122156 42273711 ~ 42303298 (+)
AMCG00015013 NA coding upstream 161374 42234599 ~ 42264080 (+)
AMCG00015003 NA coding upstream 240073 42171190 ~ 42185381 (+)
AMCG00015005 LOC106607164 coding upstream 254820 42157228 ~ 42170634 (+)
AMCG00015037 NA coding downstream 113616 42589500 ~ 42599655 (+)
AMCG00015033 LOC104951289,LOC102789488 coding downstream 164872 42640756 ~ 42649261 (+)
AMCG00015043 NA coding downstream 236475 42712359 ~ 42777983 (+)
AMCG00015039 adsl coding downstream 305984 42781868 ~ 42790274 (+)
AMCG00015042 NA coding downstream 323834 42799718 ~ 42810704 (+)
G75297 NA non-coding upstream 97840 42326183 ~ 42327614 (+)
G75293 josd1,LOC107660868 non-coding upstream 105336 42312680 ~ 42320118 (+)
G75294 NA non-coding upstream 107138 42317870 ~ 42318316 (+)
G75284 NA non-coding upstream 208930 42214594 ~ 42216524 (+)
G75213 aco2,LOC107554054,LOC107663183,LOC107734200,LOC107584097,LOC107692062 non-coding upstream 336996 42083133 ~ 42088458 (+)
G75414 NA non-coding downstream 70120 42546004 ~ 42553807 (+)
G75471 NA non-coding downstream 229201 42705085 ~ 42705397 (+)
G75295 NA other upstream 20266 42389869 ~ 42405188 (+)
AMCG00015014 rbx1 other upstream 197319 42218654 ~ 42228135 (+)
AMCG00015004 phf5a,PHF5A,LOC102780084,LOC107584099,LOC106609350 other upstream 324974 42097868 ~ 42100480 (+)
AMCG00014980 LOC108431982 other upstream 651319 41770872 ~ 41774135 (+)
G75067 NA other upstream 942881 41471213 ~ 41482573 (+)
AMCG00015032 NA other downstream 151249 42627133 ~ 42629493 (+)

Expression


Co-expression Network