AMCG00015039 (adsl)


Basic Information

Item Value
gene id AMCG00015039
gene name adsl
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42781868 ~ 42790274 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015039
GTTCAGGCGCAGCGTGCGTGagcggcagcagcagcgagGGCACCACGATGGAGGGCAGGACCCACAGCAGTGGCAGCGGGGTTGCGGAAGACGAGCACTCGAGGTACCGGTCGCCCCTGGTGTCGCGCTACGCCAGCAAGGAGATGGCTTTCAACTTCAGCGAGGAGAAGAAGTTTACTACCTGGCGGAAGCTGTGGATCTACCTGGCGAAAGCACAGAAAgatCTGGGTCTGGCTGTTACGGAGGAGCAGGTTCGCGAGATGGAGGAGGGGCTTGCAGCGGGGGTGGACTGGGCGCGGGCGGCAGCTGAGGAGCGCCGGCTGCGGCACGACGTCATGGCCCACGTGCACACCTTCGCACACGCCTGCCCCAATGCTGCGCCCATCATACACCTGGGCTCCACCTCCTGCTATGTGGGGGACAACACGgatctAATAATGCTTCGTGATGGTTTTAATATACTGCTGCCCAAGctggcTCGTGTGATTCACAGGCTGGCTAACTTTGCGGAGAAGTACGCTGACCTACCCACCCTGGGGTTCACACACTTCCaGCCGGCCCAGCTGACCACCGTGGGGAAGCGGGCGTGCCTGTGGCTTCAGGAGCTGGTGATGGACGAGGGCAACCTTCGGTATGCCAGAAACAACCTGCGTTTCCGGGGGGTCAAGGGAACCACAGGTACACAGGCCAGCTTCCTGCAGCTCTTCCACGGAGACCACAGCAAGGTGGAAGAGCTGGACAGGATGGTTACAGAAATGGCCGGCTTCAAGAAGTCTTACCTAGTGACTGGTCAGACCTACAGCCGCAAGGTGGACATCGACTCGCTGACTGTGCTGTCCAGCCTGGGCGCCACTGTGCACAAGatctgcacagataTCCGTCTGCTGGCCAACCTGAAGGAGATCGAGGAGCCCTTTGAGAAGGACCAGATAGGCTCCAGTGCGATGCCCTACAAGAGGAACCCCATGCGCAGGTCCTGGgTCGTTCGTTTCCTGGCAGAGGAGGTGCGCCCCATACTGGAGCCATACAGAAACCAGATGGAAGAGAATGTTGATCTGGAGCTTTGA

Function

symbol description
adsl Predicted to enable (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity and N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity. Predicted to be involved in 'de novo' AMP biosynthetic process. Predicted to act upstream of or within purine ribonucleotide biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in adenylosuccinase lyase deficiency. Orthologous to human ADSL (adenylosuccinate lyase).

NR:

description
PREDICTED: adenylosuccinate lyase isoform X3

GO:

id name namespace
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity molecular_function

KEGG:

id description
K01756 purB, ADSL; adenylosuccinate lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015039 True 1067 mRNA 0.60 11 42781868 42790274

Neighbor

gene id symbol gene type direction distance location
AMCG00015043 NA coding upstream 3885 42712359 ~ 42777983 (+)
AMCG00015033 LOC104951289,LOC102789488 coding upstream 132607 42640756 ~ 42649261 (+)
AMCG00015037 NA coding upstream 182213 42589500 ~ 42599655 (+)
AMCG00015018 LOC108273026 coding upstream 435089 42337369 ~ 42346779 (+)
AMCG00015019 ep300,LOC100700725,LOC106607167 coding upstream 478570 42273711 ~ 42303298 (+)
AMCG00015042 NA coding downstream 9444 42799718 ~ 42810704 (+)
AMCG00015038 NA coding downstream 22456 42812730 ~ 42819134 (+)
AMCG00015041 NA coding downstream 29377 42819651 ~ 42863983 (+)
G75471 NA non-coding upstream 76471 42705085 ~ 42705397 (+)
G75414 NA non-coding upstream 228061 42546004 ~ 42553807 (+)
G75297 NA non-coding upstream 454254 42326183 ~ 42327614 (+)
G75293 josd1,LOC107660868 non-coding upstream 461750 42312680 ~ 42320118 (+)
AMCG00015032 NA other upstream 152375 42627133 ~ 42629493 (+)
AMCG00015030 NA other upstream 305984 42425454 ~ 42475884 (+)
G75295 NA other upstream 376680 42389869 ~ 42405188 (+)
AMCG00015014 rbx1 other upstream 553733 42218654 ~ 42228135 (+)
AMCG00015004 phf5a,PHF5A,LOC102780084,LOC107584099,LOC106609350 other upstream 681388 42097868 ~ 42100480 (+)

Expression


Co-expression Network