G68434


Basic Information

Item Value
gene id G68434
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4584474 ~ 4588428 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU85517
TTTTCTAATATCAAAATAGAGAGATTTAtttgagacatttttttttttctctttctggaaACAGTTGACCTACACTAGACAGGGTGAAGCAGAGAAAAACAGTCAAGGGTTCTCTCCTACACTGGACCTCTGTGACGCTGAAATGAGCGCTGATCGCAGTCTGGGGTTCAGTCTGACacagacaataaaaacagcagaagCCAGAAAGTAGATTTCAGCGAGTGACTAgatgtatgagagagagagaatgggtgAGTCGTCGCATGTTTCGAGTGTGACGGGGAAAGCCAGCGCACACACAGCGACAAGCTTGTGTTTCGATCGAGACGCAGCAAAGCAAGACCCTACCGTGTGACAAAGTGCACTGCACGGGGCTCTGACATGGTTAGCTTTATTTAGACAAATCAGAAGCAGACCTAAAACAAAGCATGTGACCGGTAAGGGTTTAAAGATGCAGTATCCCCACGTAGAACAGACAACTAAACATACAAAGTAAAAGCTAAAATCCCCAACCCCCCTTCCCCAtcaatccaaaacaaaacaacgaaaacaaaaaattaaaacacaaaaggtaGTCGATCTATTTCGGGATCGCTGGGAGGATCATTAGCTCGCATTTCAAGATGGTACACATTGGTCAAAACCCAAATGTTACACTGAGACCTGAGACTGGGACCTTCAGAGTTGTGCACATTGGAACTGAATGAAGCGAATTGCACActgttttaattctgtatttttacaaatacagaATTCAAATTTAGTTTGGCGTCATGTAGAGTCAATTTTCAAAACTTGCCAATTAAACCTTGCTTGTCTGACTGCCTGGGACATACTGCCACTACAAGTACTGTCTTTGAAAACAGTCAAAAAGATACACAGCTTATTTTGTAACGTTGTGTCCAACCCTGAAATGGGACACGTTTCTCAGTGTCATGGTTCAGACCTCACGGTTGTAGTTCTTCGCTACAATAGTCTTAATATGCTTTGGTTTTCACTAATTCAAAAGCATAAAGGCAGGTCAGTTTGAGATGCATTACACAGAACAACATATTGGGATAAAACTGTACTTTGTCTGGCTACTTTCACCGGCACAGGTTGAGCCTCAACCAAAGAGCCATTGACTCCAGGAATGAAGGACACAGTCTCTGTACAAACCCtgcaaagaataaaaaacagacaactGCTTCCACAGACCCAAGACACGACTTCACTTTAGTGCGTTATTCCATCTGTCACGATTTTTGCAGATTATCGTCCTACACAATGATAATTACTTCGATGACACACGAAATTTCAACCGgtgcttttaattttagttttgagtttgaaataatacaaattgctgaagaaaacaaaagacgTGTGTGTGACAGTCCTGAGCTGTTATACATTTGCACAACACTatttgtgaacacacacacacacacacacacacacacacacacaaatgtagcTACAGCCTTTTTCTGTTGGATGCTGGTTAATATCCTGGATAGAAATCAGAACAAAAGTGTTTAGGgatttgggttttatttaaaaacaaaggtttttaatatattgtacgATTGCCACAGGTTTCAGACACGGCAGCGGCCACAAGTTGATAGATATTTTCAATTTAGTCTGTTTCTTCATAGTTCTGCTTTTGAAGAACACCAACATCTTTAATTTCACACAGGCGTCAGACTGGATTGGAGTCGGGAGGCTGGGGTGATGAACGGAGAAGCTAACCTGGTTTACTGTAAACAGCTGTCTGAGAGCACATGACGCAAAACACAGCACACGGTCTTTCTGCAGCCGAGCGTCAGTAGGATTCAAATCTTTCGACGGAGGCTTCCCAAAATGTCTCTGTTTTTGACATTCACCCCAATACCTGCATGCTTCCACCAACCGCTGGCATAAAGCAATCAGACTGAATGCCCCCTAACTTCCCCCAGTTCCCAATTTCGTCTGAGCTTACTAACCTCAGAAATGCTTTCATCAGACCGAACCGTTTCCAATCCTCACTGGTCCGCATTGTGGGGATTTTGCAATTGCTAAGCAGCTTGCAGTCTGTCTCTAAGCAACAGATTTGTCTTGTATCAAATCCACTTTAATTCAGTCATCTTTCACCCGCTCCTTCTGACAGGAGAACTCCATATTTAAGATGTCCCTTGAATGCCTGTGTGAACAGATTTGCGTCAGCACTCTCTCGTGTGAGATCTGGTCACACTGAGGTCTGATTGACTCTAGACCTCAGTCTTGTTTTCCAGGCCAAGGTATGCTCGGAGATGGCTGGGAGGAGGGACGCTCTATCTGAACTCGTTACTTCGGTTATATCCCTTGTTTCGGCCTGTTCATCCATAAACGTttactataaaaatataaatatttgacaaCATGCTTTACGGTGTCGCAAAAGGACTTTAGACGCTTGTCAACGGGCACCGAGGACCGAAATTTACTATTATAATATCCCTAGTCACGTTTGTGTCGATTTCTATCCAAACTCTGCTGCCCAATAAACAAAACgtgtatttgtttacattcatACAATGGACATCCAGAAGGAACGGTGTAACGGGATGCAGTTTTATACTTCAAGTAGCAGTGAGTGAGTATAAAGGTGGTTTTGAGAATTGGGTTTGAATTAGCTTCACGttattctgaaatattaaaCCGTATCGGCAGTTGACCAGTTTATTGGCAGTTTACGTCTTCACCTTACCGTAACTTTTAACCTTTACCTTTCAAAGGTAGTCTGACGATGCAATCTGACCGACTCCATTCAATAAAACACGAACCCAAGCCTGCCCAAACCTTCTGAAGtccaatgaaaaacattgagGCCCTCATTGACAACATCGCCAATTTAATATCCAAACAAAATCATTTACATTGCATCCTGTGAGAAAGAGATCCAGAAATAGATTTAGGAAGGATACTGcagctttaaaaatgtgtctatATGTGAGTCACCCAAgcaaacttttttaaatttattttttccttttgaaagaaAGCAGTCTGTCCTTGTTTAGCCCATTCTGTCTCCAAAACTGAAGTTGTACATAaaaaattatacacatttgttttcttttttttcctccaaaaaTACACTGGGTTCTTTCCTTGAATAGCGTTTCCCTGTATGAAGCTTCTTGTGCACTGGATTGCTGTGTGTCAAAGCACTTGTTTTTCATCGTTACGCAGTTTTCTTAAGTGCTCTAGAGATACCGAGACCTAAAGCGAGGAAAGATAAACAATCTATCAACAGTTTTACATCCTTTCACTCCCCTCTTGGCAGCTTCTTGGAATAacagataatataaaaagatTTTATCCACTCAAATCCCACGGTTGAAAGCAGCTCTGGGATCTAAATCACACTCCAGCTTCTATCACACAGCGCTGAACCACATTTTTAGAAAAGGGAGAATTTTTGAAGTTTTAATGTCTCGTTCTACTGAAATCCTTCGGGGGGGGGGAATTGACTGTAGTGTCcgaattataaataacaaacatcCTTATTGAGCCGggcgttttatttttcttcGTTTTGGTTTTTTAAGTTCGTTTCAATTTTTTGGCACAACCGTTCCAAATCCACGTTTCCCAAATTCTGAGCGTAATCCGACTGCTCtccaggtctctctctctctctctctctctctctctcctcgacTCAACAAGGTTCACCAGTGACCAGCCGAATCCAGCTGTGAAGGAGAGCGGGTCGGTGATGTTAATATGGTTCCCAGCAGTGCGTTCTACTGGTTCTGGAGCGGTCACGATCGCAGCGAGTGCTTCTCCCCACACATTCATGGTCCATCTCAAACACCTGACCACGTCACTATTTTCGAAGGTCAAGAACACAGACCTAGA
>TU85518
TTTTCTAATATCAAAATAGAGAGATTTAtttgagacatttttttttttctctttctggaaACAGTTGACCTACACTAGACAGGGTGAAGCAGAGAAAAACAGTCAAGGGTTCTCTCCTACACTGGACCTCTGTGACGCTGAAATGAGCGCTGATCGCAGTCTGGGGTTCAGTCTGACacagacaataaaaacagcagaagCCAGAAAGTAGATTTCAGCGAGTGACTAgatgtatgagagagagagaatgggtgAGTCGTCGCATGTTTCGAGTGTGACGGGGAAAGCCAGCGCACACACAGCGACAAGCTTGTGTTTCGATCGAGACGCAGCAAAGCAAGACCCTACCGTGTGACAAAGTGCACTGCACGGGGCTCTGACATGGTTAGCTTTATTTAGACAAATCAGAAGCAGACCTAAAACAAAGCATGTGACCGGTAAGGGTTTAAAGATGCAGTATCCCCACGTAGAACAGACAACTAAACATACAAAGTAAAAGCTAAAATCCCCAACCCCCCTTCCCCAtcaatccaaaacaaaacaacgaaaacaaaaaattaaaacacaaaaggtaGTCGATCTATTTCGGGATCGCTGGGAGGATCATTAGCTCGCATTTCAAGATGGTACACATTGGTCAAAACCCAAATGTTACACTGAGACCTGAGACTGGGACCTTCAGAGTTGTGCACATTGGAACTGAATGAAGCGAATTGCACActgttttaattctgtatttttacaaatacagaATTCAAATTTAGTTTGGCGTCATGTAGAGTCAATTTTCAAAACTTGCCAATTAAACCTTGCTTGTCTGACTGCCTGGGACATACTGCCACTACAAGTACTGTCTTTGAAAACAGTCAAAAAGATACACAGCTTATTTTGTAACGTTGTGTCCAACCCTGAAATGGGACACGTTTCTCAGTGTCATGGTTCAGACCTCACGGTTGTAGTTCTTCGCTACAATAGTCTTAATATGCTTTGGTTTTCACTAATTCAAAAGCATAAAGGCAGGTCAGTTTGAGATGCATTACACAGAACAACATATTGGGATAAAACTGTACTTTGTCTGGCTACTTTCACCGGCACAGGTTGAGCCTCAACCAAAGAGCCATTGACTCCAGGAATGAAGGACACAGTCTCTGTACAAACCCtgcaaagaataaaaaacagacaactGCTTCCACAGACCCAAGACACGACTTCACTTTAGTGCGTTATTCCATCTGTCACGATTTTTGCAGATTATCGTCCTACACAATGATAATTACTTCGATGACACACGAAATTTCAACCGgtgcttttaattttagttttgagtttgaaataatacaaattgctgaagaaaacaaaagacgTGTGTGTGACAGTCCTGAGCTGTTATACATTTGCACAACACTatttgtgaacacacacacacacacacacacacacacacacacacaaatgtagcTACAGCCTTTTTCTGTTGGATGCTGGTTAATATCCTGGATAGAAATCAGAACAAAAGTGTTTAGGgatttgggttttatttaaaaacaaaggtttttaatatattgtacgATTGCCACAGGTTTCAGACACGGCAGCGGCCACAAGTTGATAGATATTTTCAATTTAGTCTGTTTCTTCATAGTTCTGCTTTTGAAGAACACCAACATCTTTAATTTCACACAGGCGTCAGACTGGATTGGAGTCGGGAGGCTGGGGTGATGAACGGAGAAGCTAACCTGGTTTACTGTAAACAGCTGTCTGAGAGCACATGACGCAAAACACAGCACACGGTCTTTCTGCAGCCGAGCGTCAGTAGGATTCAAATCTTTCGACGGAGGCTTCCCAAAATGTCTCTGTTTTTGACATTCACCCCAATACCTGCATGCTTCCACCAACCGCTGGCATAAAGCAATCAGACTGAATGCCCCCTAACTTCCCCCAGTTCCCAATTTCGTCTGAGCTTACTAACCTCAGAAATGCTTTCATCAGACCGAACCGTTTCCAATCCTCACTGGTCCGCATTGTGGGGATTTTGCAATTGCTAAGCAGCTTGCAGTCTGTCTCTAAGCAACAGATTTGTCTTGTATCAAATCCACTTTAATTCAGTCATCTTTCACCCGCTCCTTCTGACAGGAGAACTCCATATTTAAGATGTCCCTTGAATGCCTGTGTGAACAGATTTGCGTCAGCACTCTCTCGTGTGAGATCTGGTCACACTGAGGTCTGATTGACTCTAGACCTCAGTCTTGTTTTCCAGGCCAAGGTATGCTCGGAGATGGCTGGGAGGAGGGACGCTCTATCTGAACTCGTTACTTCGGTTATATCCCTTGTTTCGGCCTGTTCATCCATAAACGTttactataaaaatataaatatttgacaaCATGCTTTACGGTGTCGCAAAAGGACTTTAGACGCTTGTCAACGGGCACCGAGGACCGAAATTTACTATTATAATATCCCTAGTCACGTTTGTGTCGATTTCTATCCAAACTCTGCTGCCCAATAAACAAAACgtgtatttgtttacattcatACAATGGACATCCAGAAGGAACGGTGTAACGGGATGCAGTTTTATACTTCAAGTAGCAGTGAGTGAGTATAAAGGTGGTTTTGAGAATTGGGTTTGAATTAGCTTCACGttattctgaaatattaaaCCGTATCGGCAGTTGACCAGTTTATTGGCAGTTTACGTCTTCACCTTACCGTAACTTTTAACCTTTACCTTTCAAAGGTAGTCTGACGATGCAATCTGACCGACTCCATTCAATAAAACACGAACCCAAGCCTGCCCAAACCTTCTGAAGtccaatgaaaaacattgagGCCCTCATTGACAACATCGCCAATTTAATATCCAAACAAAATCATTTACATTGCATCCTGTGAGAAAGAGATCCAGAAATAGATTTAGGAAGGATACTGcagctttaaaaatgtgtctatATGTGAGTCACCCAAgcaaacttttttaaatttattttttccttttgaaagaaAGCAGTCTGTCCTTGTTTAGCCCATTCTGTCTCCAAAACTGAAGTTGTACATAaaaaattatacacatttgttttcttttttttcctccaaaaaTACACTGGGTTCTTTCCTTGAATAGCGTTTCCCTGTATGAAGCTTCTTGTGCACTGGATTGCTGTGTGTCAAAGCACTTGTTTTTCATCGTTACGCAGTTTTCTTAAGTGCTCTAGAGATACCGAGACCTAAAGCGAGGAAAGATAAACAATCTATCAACAGTTTTACATCCTTTCACTCCCCTCTTGGCAGCTTCTTGGAATAacagataatataaaaagatTTTATCCACTCAAATCCCACGGTTGAAAGCAGCTCTGGGATCTAAATCACACTCCAGCTTCTATCACACAGCGCTGAACCACATTTTTAGAAAAGGGAGAATTTTTGAAGTTTTAATGTCTCGTTCTACTGAAATCCTTCGGGGGGGGGGAATTGACTGTAGTGTCcgaattataaataacaaacatcCTTATTGAGCCGggcgttttatttttcttcGTTTTGGTTTTTTAAGTTCGTTTCAATTTTTTGGCACAACCGTTCCAAATCCACGTTTCCCAAATTCTGAGCGTAATCCGACTGCTCtccaggtctctctctctctctctctctctctctctcctcgacTCAACAAGGTTCACCAGTGACCAGCCGAATCCAGCTGTGAAGGAGAGCGGGTCGGTGATGTTAATATGGTTCCCAGCAGTGCGTTCTACTGGTTCTGGAGCGGTCACGATCGCAGCGAGTGCTTCTCCCCACACATTCATGGTCCATCTCAAACACCTGACCACGTCACTATTTTCGAAGGTCAAGAACACAGACCTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85517 False 3867 lncRNA 0.42 2 4584474 4588428
TU85518 True 3869 lncRNA 0.42 2 4584474 4588428

Neighbor

gene id symbol gene type direction distance location
AMCG00014208 NA coding upstream 1265 4568669 ~ 4583209 (+)
AMCG00014209 NA coding upstream 36067 4520802 ~ 4548407 (+)
AMCG00014207 LOC108443135,LOC102799111 coding upstream 85518 4460775 ~ 4498956 (+)
AMCG00014202 NA coding upstream 267795 4298341 ~ 4316679 (+)
AMCG00014201 rab9a,LOC106581920 coding upstream 292925 4290944 ~ 4291549 (+)
AMCG00014213 anos1,LOC104963477 coding downstream 135226 4723654 ~ 4746002 (+)
AMCG00014214 NA coding downstream 249295 4837723 ~ 4851433 (+)
AMCG00014216 hdd1a coding downstream 362902 4951330 ~ 4958249 (+)
AMCG00014217 NA coding downstream 473404 5061832 ~ 5062272 (+)
AMCG00014218 NA coding downstream 491081 5079509 ~ 5079783 (+)
G68422 NA non-coding upstream 34472 4500864 ~ 4550002 (+)
G68376 trappc2 non-coding upstream 288655 4294817 ~ 4295819 (+)
G68374 NA non-coding upstream 290948 4293326 ~ 4293526 (+)
G68317 NA non-coding upstream 500510 4083763 ~ 4083964 (+)
G68292 NA non-coding upstream 629209 3954366 ~ 3955265 (+)
G68473 NA non-coding downstream 59282 4647710 ~ 4648213 (+)
G68497 NA non-coding downstream 196898 4785326 ~ 4785601 (+)
G68509 NA non-coding downstream 268601 4857029 ~ 4857230 (+)
G68538 NA non-coding downstream 862860 5451288 ~ 5451521 (+)
G68559 NA non-coding downstream 1068822 5657250 ~ 5704009 (+)
AMCG00014196 NA other upstream 452756 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 1874145 2706840 ~ 2710329 (+)
G67896 NA other upstream 2454329 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 2681787 1900220 ~ 1902687 (+)
G67801 NA other upstream 2703433 1879091 ~ 1881041 (+)
G68475 NA other downstream 60772 4649200 ~ 4651964 (+)
G68830 NA other downstream 2757767 7346195 ~ 7349467 (+)
G68848 NA other downstream 2825212 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 2876075 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 5414630 10003058 ~ 10008648 (+)

Expression


Co-expression Network