G68589


Basic Information

Item Value
gene id G68589
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5779378 ~ 5782386 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU85700
taagtatatacttttatttatactATAAGTTGTAAAAGTAAACATTACACAATTGTTGGATTATGTGTTtcattgaaattgtattattattgtctatATTTGGCACATCAACTCATAAATCCCAACCAGTAAAATGCTctagtatttaaaacaaatcagctAGTTTAGCTTTAATAACTTTGTTAAACATGAACATATGTAATCATAATCCAGCTTGTATTTGGTGTCAGGTAAATATATAGGAATTGGTTTAATTTACTCACACGAAACAGGTTGACTTCTGCAGTTCAGTTGCCTGCGtttcaaaacacttttaaaCACGTGGAGCGAGTCTTGTGTTGGGAGTGCGAGGTAATTGGATGTTGCctgtctgaaacaaaataaaaaagacgaGGAAAAGACAAGTGAAATATTTCGGCACAATATTTAGGCAGGAGCTCCAATGTGATCCTCTGCTATTAATCAAGTGTAAATGCGAAGCTGCGCTGAATGAAGCGTTCCTGGCTTGACTTCCACTTTGCCCCTGTTTGAAGCtcattctgttttgttcttcttttaatCAGATTTAATTCCGCGTGACGTCAGCAATAATAACCTCTTGGCATCGAAGACGAACAAAACATTTCGCTCTCATTTCGCTGCCAACTTTTGAAATCAGATCAGTTATATTCCCAGGGAGACTTCTCATTTTGACCGCCAGTATACAACTTTAAAAAGCCATGCATTTTTTATGCTGCACTTTTAGGCATTcatgaaattatgaaataataattaggaTTTAATTGCTCGTTAACAACAATGTGGCAAAAAGCACACCCAATTGCGCgacaaatcacaaattaatgGACTGCATATATCTAATTCAACagatatgtataatttataaattcctGACACAACAAGCTTGCCTAGCATTCGGGTGAAGCTGAGGTTATTCGAATGATTGTTCCACTAATAAGCTTACTAAATGAATTGTGCATAAGCCCAAAGCAAATCACAACTTCAACTCACCTTCCAACcatcaaactaaaacaaatggaCTTCATGACAGGTTTGCATCAGCTAGAAGAGCAGAGAATCAGATACTGGGATTGGAATTTGCACTTGACGGTTACTGTAGGTTGGGGTCATAGCTTCCAATACTTCTTATTTATCTCGTACCTTAATGTTCAGAGTTTTCATGCAAACCAGTCTCTGTCCTGTAACTCAGTTCAGTCCATTACCTCCCTTACTATAGGACCTGGTTGTTAAGCACTGTAAAGTTTGATCTGTCTAAGCGTTAAATCCACCTCAGAGACGACTAGATGTATTTGCAAATGCTTTCCTGGGCAGATCATTGCAGTAATTCCCTGTATAGGATTTGTAATAATAGTTCAGTTACTTAATTCAAGTCCTTTGGTTTTTCTAGCACGTAGGAGGGATAGCCAGGTATCGAGTCATTTATCTTCAGTTGGcatcaataaacaaatgcacaaaacgTAGACACAACGGCAAAGGACAGAAACTCTATTTGAGTCTGATTCTGACACAATGGAAAGGGAATCCAAAGGTTAGAAGTGCAATTTTTATACAAAACATCGAATCACTTACTTTTCGTTCGTCGAGTACtaatattatatttcacttttctaaagtatattttctatattttaatatttatcatATCAGCACTTTAACCAACAGTTATGATTTTGAAGTAACAGAGTATTTTAAGTAGAAGTATGATGCTGATTTAGGACGACCAATGTGTGGCACTGTGAGTATCGAAAAATTTTccagatgcaaaaaaaaagtcatgctATTGCTGAGTGATTGATATTCATAACTGCGTGTTTAGGAATGGCTCCTACTACAACACGCTTATTACAGGATAATAACACAGGGCCATTCTTCCAAGCTGTTATATAGTACACACTTTGGTCGTTACTATGTAACAACATGGGATTTTGGTGGTTCACACTTACTGTAATTTCCACTATTGCATCAACAGTATTCGCTCATCATGAGTTCAATAAAGTGCCATTCCTGTATCGTAAACCTGTCCATCACACTGatgcaaaaaaagaagaaactgtTCCATTCTTGTGTTGAAATTGTTTAAGTTTTAAACCGGGCTGTTCGGCCTTCGAAGGATGTGTTTTCTGGTGTTATATTCTGTGTGTAGTCTTTATTTCAAGAGACATTGATGTGCAACTATGTGTCCGTTATTTCCTGGGTTGTTTCAGACTATATCCACTTTTACCTCctctttctcaaaataaaatatccacaTGAATTATCAGCACCTCGTTttctaagaaaataatattaatgttgcCATAAATGTTCTATATAAATCAGCTATAACAGCTTATAACAGtagttttcaaaatatataaaatgctttaCTTTTAAGTAAATGTAGTAAACATAGGTAATATAGTCCCAATTTCCTTAACTGCAACATTGAGCTCTATATTCTATTTCCTGctaatattttgatatttttttattaaagcagaTTGTACAGTAACCAGCAACAAgggaaatgaaaacacacatccTTTATTTTGACACGGAGGTAAAAGGTTGTATTACAGAGGTCTGAGTATCATTCTGAGTGTATCTTGTGTCAAGTAGCCATAGacatatatttgtgtatctgtACTACTATCTACATATACACTGTTGATTCCTGGTCCACCTCTCATTGCTCTTCAGACACACCAATCCAGTCCAGGACTGTGATGTTTCTCCGGCtatggttttgtgtttgtatgcagTTAATGTTCCCtacaatgtacaaaaaaaacaaacaaacatacacgaCGATTTTGCCGAAGAGACGCTGAAACACACTATCCTCCTGTCCACGTTGTCAGTCCCCACCGGCTTGTGTCCCAGTGGTGGAGTCGTACCAGTGGTTATTTCTGTCCGTCGACCCCGGCCCTTCGTCTCTCACAGTTCGTCACAGCGAATGTCATTGTTCTTCGTCGACGGGTGAGTGTTGTTGTGTTCGTGCCaggccgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85700 True 3009 lncRNA 0.37 1 5779378 5782386

Neighbor

gene id symbol gene type direction distance location
AMCG00014224 NA coding upstream 4617 5755529 ~ 5774761 (+)
AMCG00014225 NA coding upstream 39457 5721897 ~ 5739921 (+)
AMCG00014223 NA coding upstream 135889 5607773 ~ 5643489 (+)
AMCG00014222 NA coding upstream 171624 5595455 ~ 5607754 (+)
AMCG00014221 prkx coding upstream 229280 5508024 ~ 5550098 (+)
AMCG00014229 sept10,LOC105911973,LOC107697805,LOC108430022,LOC103039444 coding downstream 84519 5866905 ~ 5879257 (+)
AMCG00014237 NA coding downstream 251051 6033437 ~ 6054435 (+)
AMCG00014243 NA coding downstream 452417 6234803 ~ 6239921 (+)
AMCG00014253 NA coding downstream 949238 6731624 ~ 6732517 (+)
AMCG00014259 NA coding downstream 1257368 7039754 ~ 7046875 (+)
G68559 NA non-coding upstream 75369 5657250 ~ 5704009 (+)
G68538 NA non-coding upstream 327857 5451288 ~ 5451521 (+)
G68509 NA non-coding upstream 922148 4857029 ~ 4857230 (+)
G68497 NA non-coding upstream 993777 4785326 ~ 4785601 (+)
G68473 NA non-coding upstream 1131165 4647710 ~ 4648213 (+)
G68623 NA non-coding downstream 114684 5897070 ~ 5956185 (+)
G68635 NA non-coding downstream 230296 6012682 ~ 6013059 (+)
G68637 NA non-coding downstream 272149 6054535 ~ 6056347 (+)
G68649 NA non-coding downstream 291331 6073717 ~ 6110306 (+)
G68665 NA non-coding downstream 330270 6112656 ~ 6114964 (+)
G68475 NA other upstream 1127414 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 1647660 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 3069049 2706840 ~ 2710329 (+)
G67896 NA other upstream 3649233 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 3876691 1900220 ~ 1902687 (+)
G68830 NA other downstream 1563809 7346195 ~ 7349467 (+)
G68848 NA other downstream 1631254 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 1682117 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 4220672 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 4365593 10147979 ~ 10151913 (+)

Expression


Co-expression Network