G68680 (edar,LOC107697794,LOC107757718)


Basic Information

Item Value
gene id G68680
gene name edar,LOC107697794,LOC107757718
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6054111 ~ 6056331 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU85835
CTTTAATGATACACTTTATTAATGCATATGTACAATAAtaagttatatatacacatactatTTGATTCTGTTGGCATTTCACACCTGTTTTATACacgtttaatattattttatacagtttggCGTTGAGGTAAGTGGACTGGCTGTGCTCTGGTTTTATAAACCGTGCCCTCTTGCGTCTCAGTATCCCTGTCTGAACAACACAAAGATTCAAAATGGACAATAAAAAGCTTAAACCTTATGAATACATGCTAAATAAGTTGCATCAAACATGCAGGTACATTATTCTCTCCTGTATATCAGTGGAGTCCAGCTCCTATGCTTTAAACGTCTCAGGTCAGTTTATATGTGTTGTAATTGTAGCTGAGCAGAAGTGTTTATGAACTACTCGACCTGGATTGAAAAGGGGaatttgctttttgaaaacaataatttcCAACGGCAAGGAATGATCTGAAGAACGGTCTCGTATGGAGACGTCACCGGGACCATGGGGAACTCTGTGCGGTGATAGAAATCGGTCTTAATCCATTATTAACTGACtaaatcaagaaagaaaaaaatcatattccTATGGTAGATGAACTTAGGAACACTTGTCGCACTCCTCCATTTCGGATGGAACAGACAGATAAAATACATGTAGGCGTTGTTTATAATATGACACGACTTATACACAGTTGGCTTTATTCCTACATTTAGCTTATAGTAAAATACTTAAGCAGCTGCATATCTGTTTATTCTGGTGTCTCGTATGGCTTTTCCATTTGGCTTTATTAGTTAGTTGGGGGCTGGACATCACAGACGCTTTGCGCCACAACTGTAAACCACCACGTCTCCGGGAATGCAAAGCAGCATCGCAGAGAAACCACACGAGTTGCGCATGTGTCATCTCTGAAGGCTTGGGACCACTTTTAAATTCCTCAATAGATTGAGTCTGGCAAGATGAGTGTTTTCATACGAGCAGACGACTAGCAAAGGAATACTGACGGCTTCACACTCCCGTCGACCGAGGTGCTCAGAGAAgccatgtgtgtttgtgaagctgtaaaccacacacacacacacacacacacacacatatttatatgtgcCTTGAAAGACGGCAGTTGACTGCTGATCTCTGCCATACGACACAAACACAGGCTGTCAGCAAACGCACGGCCACAGAGCAATTGAGAAGCAATTTAGCGGTAATTTGAGTTACAGTCAGAATTACAGTTTGGGACATGACTAATGGCTCTCTCTCACCTCACTCGTATTGGAACAGCATGTGTAACCCCTTCTGGGCCCGAATCGCACGGTTGTGATGAAGAGAGGGGCTGTGTAGCAAAAGTGTTACCAGAACTACAGTGATCGCAGCGAATCTCTTAAAGCCCCCGGTCTCTCTAAACAGTTCCTTCTTTTCCTGTTGCTGGACTGTGTGTTTAAAGTACGGCCACTGGGCCTTCTCCACGAGAGGTACAAAACATAACTGAAAGCCtgtcaaaaactaaaactgactGCAAAGAATCGGGcggatttaaaatatatatttttttttttcttaaaagtgGCTATCAGGGCGTCCAGCGcactgtttcacacacacaacaaaagacGAAAAATAAGTAcgattttaaacaaaacaaaaataatcaatgcaTAGGTTAAACAACTGgcttttgttgtgtttaattcTCTCATTAAACCTTTGTCCTTGGGAGCCAGTTTCAGTCTTGGAATGACTGGAAAACCAACCAAAAAGaaacgaaacaaaacacaacacaacccgGGCCGTCGGGGCGTCGCTCTCCCGTGCGCAGCTGCCCGGGGCCCGGCGCAATTCTTCATTGTGGAGGGATGCCgagtgtggggtggggggggacagcTCAGACGCTGGCGCAGCGAGACGAGATGGGCGGGCTGGTGGGGGGGCCTCCCTCGGCGCCCCCCAAGATGTCTGAGCACAGCGACTCGACGGCGTCCAGCCTCTCGATCTGCACCAGCTTGGTGAGCAGGTCGGGGATGCTGTAGCCCGCGGTGCTGATGCGGTCGAACAGCTGCATGCCGTCTGTCATGCCCCCGATCTCGTCCCTCTTCAGGCCGAAGCTCTCGGCCAGGTGGCGCCAGGTCTTCACCACCGCCTTCTCCGTGTTGTAGGTGGAGCTCAGCATGCGGCTGGTCTTCTCCAGGCAGTCGAAGGGCAGCTCCGTG

Function

symbol description
edar Predicted to enable signaling receptor activity. Acts upstream of or within dermal bone morphogenesis and fin development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including epidermal cell; integument; mouth; pectoral fin skeleton; and pelvic fin bud. Human ortholog(s) of this gene implicated in ectodermal dysplasia 10A and ectodermal dysplasia 10B. Orthologous to human EDAR (ectodysplasin A receptor).

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member EDAR

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85835 True 2196 lncRNA 0.46 2 6054111 6056331

Neighbor

gene id symbol gene type direction distance location
AMCG00014238 sh3rf3,LOC106582226 coding downstream 49883 6003637 ~ 6004228 (-)
AMCG00014235 NA coding downstream 142711 5908142 ~ 5911400 (-)
AMCG00014234 NA coding downstream 147858 5896567 ~ 5906253 (-)
AMCG00014236 NA coding downstream 160165 5893211 ~ 5893946 (-)
AMCG00014233 LOC107697803 coding downstream 162860 5886471 ~ 5891251 (-)
AMCG00014240 NA coding upstream 27056 6083387 ~ 6104883 (-)
AMCG00014242 LOC106582183,LOC103353988 coding upstream 53028 6109359 ~ 6124346 (-)
AMCG00014239 NA coding upstream 89277 6145608 ~ 6163757 (-)
AMCG00014244 LOC106582186,LOC106586545,LOC108440498,LOC108437783 coding upstream 149597 6205928 ~ 6212795 (-)
AMCG00014246 NA coding upstream 164666 6220997 ~ 6222712 (-)
G68595 NA non-coding downstream 228182 5825504 ~ 5825929 (-)
G68590 NA non-coding downstream 271719 5779485 ~ 5782392 (-)
G68581 NA non-coding downstream 344031 5709818 ~ 5710080 (-)
G68572 NA non-coding downstream 350184 5657305 ~ 5703927 (-)
G68547 NA non-coding downstream 466119 5587499 ~ 5587992 (-)
G68722 NA non-coding upstream 478149 6534480 ~ 6534701 (-)
G68724 NA non-coding upstream 623694 6680025 ~ 6680288 (-)
G68757 NA non-coding upstream 934272 6990603 ~ 6990867 (-)
G68767 NA non-coding upstream 987794 7044125 ~ 7045812 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding upstream 997600 7053931 ~ 7054306 (-)
AMCG00014228 NA other downstream 375612 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 2659357 3385757 ~ 3394754 (-)
G68088 NA other downstream 3224967 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 3400864 2641059 ~ 2653247 (-)
AMCG00014134 NA other downstream 3511414 2531954 ~ 2542697 (-)
AMCG00014241 NA other upstream 3158 6059489 ~ 6108358 (-)
AMCG00014271 NA other upstream 1321757 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 1345821 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 1357398 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 2078572 8134903 ~ 8139126 (-)

Expression


Co-expression Network