G68874


Basic Information

Item Value
gene id G68874
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7455978 ~ 7459889 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU86086
ATCAGTCttaacatggttttatttgGTGAATGTACATTGTTACAAtccatttacaaaaacaaaaacaaagtccaGATTCTTTTTTTCTCATGAATTCTTTTTTCAGTGCAATTGGTAGCAACAGCCAACAGTCCAACAAGAGGAATGACAGAAGAGCAGAGCATGCATTCTTCTCCAGAATCTCCACAACGTGATTTCCAGGGCAAAGGTTgactaaaatgaaataaacccACACCCCATTTGCCCCCAGCCGGAGGGCTCTCCATGCCACATGTGAAACGACCCCTTTGGTTTTTTCCCCAGAAACCACACTAGTAATCTGAGCACACACTGTAATCTGCTCCTAGCAGGTTTCATATCCTTGTAAACAAATCCCaattctgattaaaacaaaacaccttaAATATGATCTGCAGCCACAATTCCCCTCGTCCCAGATAGTGTCGAGTGCCCAGACATCCCAGAAACACCGGCTCGGCCATGAGGTGTGCTTGGGTCAAGGAAGCTCGTGGGTCACCGCTGTCATCCTGGCAGCCGTCCTCTTGCACACACAGTTACAGGTGGGCTGTGCAGACAACCGCAGTGTGGAGTGGCCGCTGTGGATGTCCAGCCCGGGGTGCCCGTCTCCAGTGTGGGAGCACCACGGCGAGGAAGGCGGGGGGGGGTTCCTCCTTTTCAAACTCTTAATTTCCAGAGCTAATAAGTGACTTCATTGTACCGCTATTACCCTTGTGCCCACTGGTATCGAATCCTGCACTGGGCCTAGCACAGTAGTGTCAAACCTCAATAGATGCCCATCCCTCAAAAGTTTTGGGACAGAAGCTCTCTGTGCAGCGCTGCACCCCAGAGCTCACTGATAGCTCACTGACTTCGAGATAGACGTCCTTGGGAGAGTTAGTTAGATTGGAAGGTGCCTCAGACAGAGCTCAGTGAGAGACTATAACATACACACCGCTGTCTAGAAAACCAGCAGTAAACAGGTCACACCCACCCCCCCGCCCACAGATGACCACACACTCACGCCAATCGTCACAGGAATGGATTCCACAAAAAAGTAGACAATTTCAAAACTGTATCGTGACCAACAGATTGGGGGGAACTTGGCAAATTAAGTTTCCATTGACAATTTGTGTGagaaatatttagtttgatcacaatacatttttgaaatggtATACTTTAACAATAACCATTTAACAACTTGAGCTGATCTCTAACAGACTCATCATTTTGACCTTTTCGATCCTTCAGCTCAGCATTGAAAGAAGCCTTAGAAATACAATCCTGCAAGTGCCAGCCCTTTATCTTTAGAGGCAACCAgtcattaatttgtttgtaacCCCTTTACAGTGCCCAGAGGTTATGTAGATGCTGTATTTACTTtccaaaaaagcattttaatgttaAGCACAAACTGATATGTAACAATGAAACTAACCCTCCTCAAATGGTATTGCCACTGCCAAAACACCACAAATTGCATCCAATCTGTTCCACGCCATAACGGCGCACAATGGCACGCTCGGGCACAAAACTAGTCTCTTTAATAGCCTCGTACAGCCTCTAGTCTCTGATCATCAGCTGCTGTTCCCCGTGCCTCAGTTAAGTCACCCGTCTCTTGTCCTGATTGGATCCCTGCACACTTTTTCAGTCCAAACCTTTCAAATACAGCTTAATATACAAACACTCCTGGAAATAATGGACTCATAACTTCAGCCCCTGGCTCtcacttccccactccaggcaggAGCCACACGCACGTCCACATTAACAGACTCGACTGCAGCCGCGTCTTATCGATGGAGGTGGCCAACTGCAGCCTGCAGAACAGACGTGGCAAAAGCCTGCACAGGCAGCAGTGGCACACAAGGCTGATCTTTACACACCTGCCCTCTGGAAAGGGCAGCTCGTCATACAATTGACAGGGAATTTTCAAGAGATGCAGGCAGCTGAatgagtaagtgtgtgtgtatgtatgcgtgtgtatgAGCAGTTAAAGCCCTCATCTGCAGGGCTAATGACATGACACTTCACACATCAAAAGAGCGTCTGAGATCACGCATACAACAAACTCCTCCTCTCTGCAGGTCCAACACTACCCTTTCAGTACAACTTTCCACTGCTCGACCGACAAACGCCACTCTGCACGGTCCGATGCCATCGTGCATCCGTCGTGGCCGACCGTCGTCTTCTCTGCTCTGCCTGCCCTGTCCCCGGGGTGGGCGTGTCTAGAATCGTCTGCAGAACGTGGCAGAAACTCATTACCCTATTCTCCTGCTTGCCAGTCGAAGCCCATGCCTCTGACTATTCCCCAAAGCTAcaatgcatataaaaaaaataaaaagcacattttaaaaataaactttaatggTTTCTTCTTCCCCCCCTTTTTGCAGTTTCCTCAGAACACAAACAATGGAGAAACAaccagaaaggaaataaaatgtcctAATCTTCTAGAACTGGACTGAGTCTCCGGGGTGAAGGCCAGCTCTGACCAacaaaatttataaaaaaaaaaaaaaaaaaaaaaaaagctggatGGTCGAACAGGGTTACAGCACTAgaattatattaacatttatttataaagaaaattcCACACATGCTGTAcagaatataaaaagaaaacctaaaataaagtaacaaaaaaataaactgtactgcctgtttttcattttaaagcccACTTTTCCCACGCGCGTTTCCCGAATCCAGGAGAACATTacacattaatacaattatcattcatattattttacttgtaaTTGACTAAAACAGTTTCCAGCTCTGTGGTGCCTCCACATCACTTCACAAGTAtcagagggtgtgtgtgtaggggggacGGTCAGACAGAACAGACCGGCAGGACATTCGAACAGACAGCTCATCTGCGTGTGAGTAGCTAATGAAGGCCCAGACCCGGCTAGCCGCGCACAGTACGTTGGACTGTAGAATCCGTGCATCGCCTCCGCCTCCTGGGGCAAAAGTACCTTGAGCACCTGACctattgccccccccccccccctcccagaTGAGCCAACACTGTGCGCGGAAACTATTTTTAGTATTGTTGTGGTCTTGTTTCACAGTAAGCAAGCAAGTGGTCATGGTCATTCTACAAATAAAACTAGCAGATTAAAAAGGGGGGTTTTGAGACAGGGGCGCCCGGACACTAATTTAGCGGCTTGTCTTTCTGTTATTGATCCGTGAATTAGTGTTTACATTCAAATGCAGAAAAGGCTCCTCCCgacgtgcgtgtgcgtgtttgtgtggaTGAACAGCACCGTTCGGGTTTTGTGACACTGTGGGGAGCGTTCACTCTATAGGAAGACAGGATATTGGGCGGCTCTACAAAGGCCCCCACTGGTATGGTGGAGCTCTCTGACACCGGGGGCAGGCTGGAGAGGGAAAGGGgtggaggggggcagggggtttCTGGGTCTTGGCTCTGTGTTTGGATGTGAGTCGGAGCTCCATAGGGCGGGATCTTAGGACAGCCCTCCCCATCACGTCTCCTGACTGTGGGGTTGTGTGTCATGTGACCTAACTGGGCCAGGGTTAGCCAGGGGGATTAGGCAGGGCTGGGAGATGGGGACAGGGAGTCGGGGGACACAGGTAAGAGGCTCAGCACTGAACTGTGAACGCGGACGTTGCCATAAGCCTCCTGAACACACACTCGCTCTCTGAACACACTCACACGGCAGAACCAACATCAACAAGACGCACGAGAATACAGAAACAGCTCATATGACTGTGTCCCCCCTCCCCTGTCTGCGTTCAACATCGTAttccacccaaaaaaaaaagaggagcaggttagtagtagtagatgtCAGGGCCAGGCTCAGTAGTGGAAGGGggccggggtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86086 True 3873 lncRNA 0.48 2 7455978 7459889

Neighbor

gene id symbol gene type direction distance location
AMCG00014275 NA coding downstream 19872 7426221 ~ 7436106 (-)
AMCG00014279 NA coding downstream 30302 7425128 ~ 7425676 (-)
AMCG00014277 NA coding downstream 58209 7387618 ~ 7397769 (-)
AMCG00014270 LOC102779158 coding downstream 79055 7367394 ~ 7376923 (-)
AMCG00014269 LOC108441420,LOC107582737,LOC107726519,LOC106592197 coding downstream 90238 7347452 ~ 7365740 (-)
AMCG00014280 NA coding upstream 109422 7569311 ~ 7580100 (-)
AMCG00014284 NA coding upstream 208664 7668553 ~ 7675258 (-)
AMCG00014287 NA coding upstream 271125 7731014 ~ 7751865 (-)
AMCG00014286 NA coding upstream 293017 7752906 ~ 7783002 (-)
AMCG00014291 LOC107586940 coding upstream 561096 8020985 ~ 8060018 (-)
G68867 NA non-coding downstream 14806 7440500 ~ 7441172 (-)
G68829 NA non-coding downstream 115423 7340351 ~ 7340555 (-)
G68827 NA non-coding downstream 166541 7288936 ~ 7289437 (-)
G68826 NA non-coding downstream 167643 7288063 ~ 7288335 (-)
G68774 NA non-coding downstream 397659 7054777 ~ 7058319 (-)
G68875 NA non-coding upstream 5520 7465409 ~ 7465662 (-)
G68905 NA non-coding upstream 166096 7625985 ~ 7626375 (-)
G68981 NA non-coding upstream 414264 7874153 ~ 7874358 (-)
G69086 NA non-coding upstream 766605 8226494 ~ 8250561 (-)
G69233 NA non-coding upstream 1430667 8890556 ~ 8890839 (-)
AMCG00014278 NA other downstream 32687 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 44088 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 68994 7378088 ~ 7386984 (-)
AMCG00014241 NA other downstream 1347620 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 1777479 5659072 ~ 5678499 (-)
AMCG00014297 NA other upstream 675014 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 696043 8155932 ~ 8158590 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 923396 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1845350 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 2541245 10001134 ~ 10017751 (-)

Expression


Co-expression Network