G69086


Basic Information

Item Value
gene id G69086
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8226494 ~ 8250561 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU86331
AACAGGCTCACATACATGACAATCCCCGTTACACAAGCCCTCACCAAACCTCTGTTCACATTCTAGTGCTCTACAGTAGCCGCAATGTTGGCTAAGGGTGACAGCACCAACCCCCAGCCGACCGGGCCTTTCAAACGATCATGAGGATAAGACACAGGAAAACCGCATGAAGAAGGCTGATGTAGGAAACCtttgtacagtaaaaaaaataccagCCTGCAGGACAGATTTTATTGACAGATATCACATGCAGAACATCTCAAATGAAACAGTTGCAAGGTTTTTCTAGGGGTCTGAATGAGAGTCAGGCAGGAGGAGGGATGTCCCCGGAGGACGTACATTACACGAAGAAGCGGCCGTGGACACGCAGCACGGAGAAGTGCGATTCCGCCGATTGGTCACTGGTGGGCAAGCGTCCCACCTCGATGTCGCACGGCCAGTCAAACAGCAGAGAAAATCTAAAGGCTGCTACATTCATGATTGCACAATCTCCAGTCATACTTCCAGGCTGAAAGGGGCGTCAACTCGACCCACAATCCATATCAAAAGAGACGTTTGTAGAATAGAAAGAATGGTCAGATTTCCTCAAGATTTCGATGAAAAAAGAAGCGGCTCAGTGTCTTCCCGAAAACAAACAACTTtacaaaaagacaaatgcacagatTACCACCCCACTTCCCTTTGCAGTAACTGGAAACAGAATTTACACACATCATTTGTTGGCTATATTTCTCCTCCGATTCAAAAACAGAGAAGACCACAAGAGTTTGGAAACACAGAAAGGCTGTACCGCAGGGCAACAAAGTGAAGCCGAATATTTCCAGTAAAAGACAGTGGCTGTGCTTCCATGAAGTGTATAGTCAGTCACAGATGGGTCTTTGAGACgcatttcaataattaattagaaGGTCTATAGAGTGGGCTCCAAAGAAAATATGGGATCCAGATAAAGCATGTTTTAGGAAGGATGGCATTAATCATTTAGGGAGATGTACGATTACGTTACATtacaatattgaattatttagcaTAAATACACTCTCAGACCAAGACCCTTTTGAAATGTCATGTCTAGCTTTCGATCCCAAATGATTTTTAGTAATCCACGTGGCCAGAACCCACTCGGATCCAAACTCCTGTACAGGCTTATTATACAAGTATATCACTTCAAGAATGTATTGTGATCCAACTATACATTCCTGATCTACAAATAGTTGCCAGGCTGTAACATCTTTGCGAGTTACAGTTTCCATTGATGATTATTTGTGCATCGGGAATATGTAGTTTGATCACAGTACGTGTGTGAAATGCTGTACTGCTTTCAGAATAACCCTGTAATTTTAGAGTAATACACACTAAACGCTCCTTTCTGCGAAAGACTTTAAGATCAAGGTCCTcaacaaatcacatttaaaaagcagaaatttAAAGCTGGGGTCCCCAGTCTTGGAGGGCAGCCATGATTTTATATCCACCTGAGCCCCTTAGTACCCAATTCAACTGTTTATTGCCTTTCCAGAACCAAAGCAACCTCTCTTAGCAGCTCTGATAGAGATCTGAATGCCTGCTGGACCAGGACTGGGGACCCCAGACACAATCCAACACACATCCCACTCATTCGCAAGCTTGAGTTTCAGATATCAATGATGACAGTATTTGGAGCCCACTGTATACATGTCACATTTACACTTatataacaacacaaacaaacagtacaCACTTCACTTCCTAGTAATAATTACTCGAGACGcatttaaacaatgtgattACTTCATTTGTTATTCACGATTAAATTCAGAACCCACTCGGGATTCTCTGCAATTAGTAAGCAATGCATTTTCAACCAGACAGGACAGCCTTTTGTTCGTCGGCATAATGACTGCAGCTCAACCGCAGTTAAAGTGCTTCAGACTTTATCTCCTGCAGAGAACATTTTCACTAACCCGCTGCAGTGCTACGAGTTGCACTGCAGCTCCAAGATGCAACTAAAGACTTTAAACTGAGTGACAGCTTTACAACTGTGGGAAAACATTATTGCGCAAAATTAGCAGAAGTAGAAAAATTCAGTCAATTTGGACATTTGGCCTTATACCCTCTGCCGAATGGGAAGTCACAGTATCCTTTCACAGAGACCATCAGAAAATGGCTCGACACCGAAccagaaacacacagcagtCGAGTCACACAGATTTAACTACAGTGAAgcatttcaattacattattattttttggacGTTTCAAGAACTGATATCTTTCTCAACTAAAGTAACACTATGCTGCCGATACAGCACATCTAATGGCTTCCTGCAGCCTCCCCTCTGGCCTGTTAGTCAACACAGTGCTGTCCACTGAACCTTCATTGCAACCCAGTACATTATTCCAACCAACAGCTTTCGTATTGCTTCACTTGGTCTTGTTGGGAGAAGTGACCAACTAAAGTGCAGCCCACTTTTCTCTGGGACCCTCTGTGTATAGCTAGTCTCAGGTGTATGGCAGACATTGGCGAGTCTTGGCACCAGTGGGTATGGTTTCAATACAAAATGCCGAACAAGGTAGGAAGGGCGCAGACACAGTCTCTCAGTGCTGCAATGGACAGCACATTTACATCAGGTTAATGAGAATGAAGTGTGAATACGATACTAAACCGCTGAAGTGGTCGGTAATAGCTGGCTAAGTGTGCGGGATGGACTAAAAATTAGTAATAAATTTATAAAAATGGATCCATCCGAGGTGTAGGAGCATTGCTCCGGTCCCAGAAATAATGCATTGAAATGGCAATTCAACTCCAGTCGCTTCACACAGTGGTGAATAAGAGAGTGGAGATGTAGAAGTATTACATATTGTATTCATCTGTTCCCATTAGCAAGCCTACATGATCGCCTAAAATCGCCTAAAATGCATCCCGTCCCCCTTTCGTCATCTCATGGCTACTCACAATAAAGCACTGCCACTTTAGTGATGCTCAAGAAGGCCCACGTTGAAATTATGCTCTGACACAGAAGTGGATTGTATAGCGAGACCAATCAGAGCTGCTTCTGTTTCAACTTTCCTCGAACCTAGAGCAGAAGCATTAAGCTCCACGAGATGTAATCTGTGATCCTTAAAAACATGTAACCCACGATTAATGGACATCGTTGACTCTAGAACAGTCTATATGTGTATGTGATGCTTTGATAGCCACTGCacttgtaaaacaaaacaaagagggTGGTTTACATTAAAATCATTTAGTTTCATGCTTACTGGGGTCTTCTGGTGGGCTAGCGGGGATGAACTATGGCTCACACGTTAGCAGAGGCCTGGCGACCTTTTGGCCCATCTTCCAGGGCTGAGTCTCTTAGCAGCAATGTGACTCGATTAGGACAGTTGATTGGCTTCACAGACCTACCCCTGGCTCAGGCATTTAAAGCGCCCGACTGACGACCTTTGTCTTAGGATGGAAAGTGATCAATTCTAGCTTGGTTAAGCTCCTCCCCTTTCGATTCTAGGACCACCTCTCAAAAGAGGTACAGCAATCGTGTGCTGAACTCATTTCCCAGGAGGTTGTAAAGTTTTCAAATACATCCTCTGGgaaagtttcctttttttttttttttttccctctcctttCCCTCGctcaagcatttaaaaaaaaaaaaagacgacatacaaataataaaaataacatctatACTGCATACAGCACATGATCTCATCGTGAATAAAGGTTGCCGACACGAGCAAAGCCGCATTTCCTCCAGTCCGTACTTGATGAGAATGAAATGCcgcagaattgtttttttttttttttctgtcccttGCTCCTTAAAGAGCTACGATTGGATGATCAGCTATGGCCGGCCTACATGGCCCGAGTTTCTCCAGGGGCAAGAAGGGTCTCAATCCAGAAGATGTGGTTCTGGAAGGTGAACAGAGCCAGACCCATGTAGGAGAAGATGAAGTTTTCAGCCAGGAAGTGCAGAACCTCAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86331 True 3971 lncRNA 0.43 2 8226494 8250561

Neighbor

gene id symbol gene type direction distance location
AMCG00014301 rp2,LOC107753404,LOC107711097,LOC107685300 coding downstream 28869 8189023 ~ 8197625 (-)
AMCG00014300 LOC107585190 coding downstream 40254 8166242 ~ 8186240 (-)
AMCG00014295 NA coding downstream 71091 8148387 ~ 8155403 (-)
AMCG00014296 NA coding downstream 79486 8142189 ~ 8147008 (-)
AMCG00014291 LOC107586940 coding downstream 166476 8020985 ~ 8060018 (-)
AMCG00014302 LOC107582727 coding upstream 9166 8259727 ~ 8260980 (-)
AMCG00014303 NA coding upstream 53970 8304531 ~ 8305181 (-)
AMCG00014305 nipa2 coding upstream 71873 8322434 ~ 8326420 (-)
AMCG00014304 NA coding upstream 79495 8330056 ~ 8334452 (-)
AMCG00014312 NA coding upstream 286376 8536937 ~ 8539049 (-)
G68981 NA non-coding downstream 352136 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 600119 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 760832 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 766605 7455978 ~ 7459889 (-)
G68867 NA non-coding downstream 785322 7440500 ~ 7441172 (-)
G69233 NA non-coding upstream 639995 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 747865 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 1099227 9349788 ~ 9355238 (-)
G69372 NA non-coding upstream 1339263 9589824 ~ 9590081 (-)
G69373 NA non-coding upstream 1340615 9591176 ~ 9591381 (-)
AMCG00014298 NA other downstream 67904 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 87368 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 803203 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 814604 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 839510 7378088 ~ 7386984 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 132724 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1054678 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 1750573 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 1807536 10058097 ~ 10061230 (-)
G69537 NA other upstream 2546155 10796716 ~ 10798147 (-)

Expression


Co-expression Network