G69326


Basic Information

Item Value
gene id G69326
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9366537 ~ 9376350 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU86614
acacacacacacacacacacatatatacacacaaatacacagaaatattCTCATTAATTGTATTTGGATATATTGGACACTACACGTTACTGCATCTACCAAAATGAAAGCAGCTTACGTACAAAAGTATCCATAACTATTAACCTGAAATAGTTGCACTGCATGTACTTTACAGACGGTGGTGTGTAAACTCTCAATGATAATTGATGCAAAACCCTGTGATATGATTGTGCTGCTAATCTCAGTGCGATCCTAGATCTTCATACATAAAGCATTGTTTCTGCAGAGCTACCCAAGCATTCGATATGTTAGCATTCGATATGTCTATGATTATCCACTAATGTGGGTGCATTGTCATGAATGTGTTTTCCTCGACAACCACAATGctggtttctttttcttatgAAAGGACTGTTGTGTCAATGTGCGAACATACACTAAACTGGTATTCAGTCAAGGGTTATTTTTTGTCCTCTAAATCTGAGAAAGCATGCTCTACCTACAGTATATTCTTCCATGGACAGTGGAATGACTTATTGTGTTGAGACCTTAAAACAGACTTGCTGATATGTTTCTACTGGTCTTGTTGAGTTGCAGGTGAGTGtggttgtatttaaattatatatacagtatatatagatCACAGAACTTTCACACCTATCATTTTAACAGTGAACTGCATTTCACAAACGGGcatttgttgcttttaaaatgtgtctgagGCGTCCTATCAAGTCTCAACCTTCCCATAGGTTCCCTCCGGAGGCCTGTAATGTTTTGGAAAAGCCTTCAACTGCAGAGTGTTAAAAGCATACTTGCGACATCCCACATTCTTCATGGTGTTTTCCCGCCGACAACCCTCACTGGGGGGAGAACAAGTACAGAGAATGACAgcagtgaagaaacaaaaaggctGTTAAGacaatgagaaactgaacaacCTTCTAACAAGCGCTAATAGCAATGGCTGATGGCAAGAGAGGGTGAAAAATGGACTGCAGTCAGCTTTAGAAAACCATTTTCACAGAACAGAacctaacaaagcaaaacaaaatcagaatttAACCAAAACATACAAGATTGATGCAGATAATCCTTTCACCATAAGTAAATGGATTGTTTAAATAggccatacacacacagtattggTTGAGTTCCATCACcgtacaaattaaaacattgttcaaGAGATTGAGACAACACCCCACGACCTAATACAGATAAGGGATTCTGATATGCAAGTGTGGATCTGATTACAGACATTCTTTGGCTAAATCCCGTTTGGCTGAGGGGCGGCAGGCATGCCATGGGGCAATGCTGCCACAGCCCCTCCAAATGAAGCAAGCCAAGGGGCACGGACTCATGAGGGGGAGGAATACAAGCAGCACACTCTAGCGAAATAAGAGCTTTTCTTGTATCTACAGGAGGACAGGACGTAAAGTGTgattttgggggttgtcttcaCTTCCTAACTTAAATGGTTTTACTATGGCTTATTTAATTGCAACACTGGGTAAGGGGTTTAGCAAGTTATATGTGAAAGCAAACTCAGTTTAACTACTGAGAGGTTGTAATTCgtgtacaacaaaaacaacatcatgaTACTGCGGAGAGAACTTCATGTGTGTAGAAACAATGGAGATTTGACATTGAATTTCCATACATTTCCACATTGCAGAACTTTAGTTCAGTCCTTCCTGATTCAAAAAGGTTATGCAATTTTTAATACTGTCTGCATGATGGGTGTGCTTGCCTTATCacaatcagttttaaaataactagTATTAAAAAGTCTACTtcgattttatttattttgtaacaatgcATTGACTTCATATACAATAAAAAGGAATGCCACATGCTAATGatataaaagttattttgtatattaatgtattctcTTAAGACAGAAtactatgaaaaacaaatataaagtaaaaaacaaGAACCTATTCCCTTTGCCATGGACACTGTaagcatttaatattttctataaACAAGACCGAAATGTTCTGCTTCAATACCATATGTTGCCCTACAGATAAATAGACATTCACTTCACAAGACCTTGTGTCAtggattacaaatgtatttttatttatcagtaTTTAACCTTGTCTTTCACTTTATGTGTCATGTCAACATGTCTGTATGTCCTGCTGAGGAGATCAGTGCAACTTACTCCTGGAGCAAGCCGGTGACAGAGTTAAAATCTGTATATGAAGTACACACATCAGTGTCAGATCTCATCTGGCATCTGTGTTACACCACCGTGTCTGGGCTGCCTTTCCACATTTGCATTGCCCAAGTATTGTAAGGCTTTGTCTTTGAAAGCTGTATCCTGTGCTTAACACAGACTgtacagaataatacattatgaTGGGCTGATATACTATGGACACCTGGCAGAATCTGGGCAGACCACCAGCTGTAACTGACCAGCTGTCAAAAGCTCAACATCATGTACCCATACCCTGGGCAATCACCTGTTCTGAAACCTGTTAAGCTTGTTTGTTCTTCCAGGACTTTCCTCTAAAGTCAATTTCAGATTAAACTAGAGACCTCCGAAGAAGGTCCTGTAAAGGAAATGGGCTGCACTTGCACAACATTCGAAATGATTCAATGAGTGCTCCTTTACCCATGACAATGATGACAATTACAATTAGTAAAAGTCTCCATTTTCCCTTTATACAGTTCTCAATTTTACCTTATAGGgaagtgtatttgtgtttcatttctcCTTGGAATTTTCTGTCTTGCAGAAAGGTGTTACTTTCTTCTTCAAAGACAGAAGAAGGTTAGTTATAAAACAGatggtataaaataaataattcaattctTGTAACATTTACA

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86614 True 2853 lncRNA 0.38 2 9366537 9376350

Neighbor

gene id symbol gene type direction distance location
AMCG00014327 dcaf6 coding upstream 5361 9328690 ~ 9361176 (+)
AMCG00014324 NA coding upstream 93482 9259294 ~ 9273055 (+)
AMCG00014322 nme7,LOC107732015,LOC107590639,LOC107659027 coding upstream 194475 9157744 ~ 9172062 (+)
AMCG00014323 LOC104949108 coding upstream 222111 9137031 ~ 9144426 (+)
AMCG00014321 NA coding upstream 236006 9089874 ~ 9130531 (+)
AMCG00014329 NA coding downstream 66849 9443199 ~ 9458087 (+)
AMCG00014330 NA coding downstream 99059 9475409 ~ 9482055 (+)
AMCG00014336 NA coding downstream 427607 9803957 ~ 9808880 (+)
AMCG00014337 NA coding downstream 464673 9841023 ~ 9908262 (+)
AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding downstream 537775 9914125 ~ 9916789 (+)
G69232 NA non-coding upstream 475703 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 630598 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 1230327 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 1351534 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 1491795 7874527 ~ 7874742 (+)
G69384 NA non-coding downstream 525100 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 598074 9974424 ~ 10028351 (+)
G69428 NA non-coding downstream 678141 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 679027 10055377 ~ 10055733 (+)
G69457 NA non-coding downstream 847321 10223671 ~ 10224035 (+)
AMCG00014272 tbc1d23 other upstream 1883977 7464503 ~ 7482560 (+)
G68848 NA other upstream 1949943 7413640 ~ 7416594 (+)
G68830 NA other upstream 2017070 7346195 ~ 7349467 (+)
G68475 NA other upstream 4714573 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 5234819 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 626708 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 771629 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 3869959 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 4278888 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4813214 14189564 ~ 14205014 (+)

Expression


Co-expression Network