G69352 (dcaf6)


Basic Information

Item Value
gene id G69352
gene name dcaf6
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9349788 ~ 9355238 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU86641
CTGGGGTCAAAGGGGTGGGGCTGAAGGCAGTTCACCACATGATTGTCAGCCTCCAGCAGCATCAGATGCTCAGCTGTGTGCCGATCCCAGATAAAGATGTGCCCACAGTCAGAGCCACTCATCACAAAGTTATTCCCCCAGAAACTGGAGTTGCGATGGCCTTTGTAGACCATCTTGACGGTGGGCTTCCTGATGTTCTGGGTCTCGCTCTCCTCCATCTCGCgcctctccttcctcctcctgaAGAGCTCCTGGATGCGGGCAGCAGCGGAGCGCCTGCGGGGAAGAAGCGGCAGCTGTTATCCTTCCCAAACCGACCACGCgtcaccctctctccctcaagCCGAGACGCTTCTTCTGAAGGCGGTGGGTAAAGGGGCGGACTGTACGAGTTTGCTCAGGTGACACCGAAAACAGCCACAGTTTTCACTTGTCAATTCTACATCTGTAAGTTACAGATCCCCGATCAGAGGTTAATGATATTATCATGAACTTCAGTGTGTCCAGTGAAACATTATAGTAAATCATGGATTCGTGGTTCAGTTTTAAGATGTGTAATagttatatttgtgtattttggaaGGAAAATTCTGAGAAGTATGATTCATTTCTGTAGCTGATGTTTATATGACTGAAGCTTCAGCTGTTTTGAATTCTATTTCAATTACTTGTAGAGAGATCGAAAATAGCACTTCCATTTttgttctggttctggttctctTAAACAGGGGAGGCAGTGCTCTTGGTGACCAAACTCTGAGGAACAAAATAGGCTGGCCATCTGAACTGCAAGTGCCTTTAATTTGAGAAACATCAAGCTTATTATTACACATTGTGAGTAAGAGCTTGATCACCGTTTGATTCTATTTTAGACGGATACCggtccttctttttttttttaaactgtgtataaGGTATGCATACCTTTATCATACAAACCAtttggattattttaataaaaggttaGCAAATTTATACTCCCAAAAGCTATAGTAAACAAGCATGAAACTGCTTTATTTATCTGATGTGTTTAATTACAGATTAATCCTTCTGAATTACACATAATTTATGACCCAGACTGCTCTCACAAATGCTGTGACTGCCCCTGCAGTATGCTGGTTTGATGAAATCATCTAATCAAAAGTCTAGGGCCCGGAGGAATCTGCAGTCCGGCCCAAACTAGTTTGAAGCAGATGCTTAAATTGCATTGATCTAAACAgacacaataatttaattttacctAGAATACATGGCCTGGGTATAATTTCATGATTTAGGACCTCAATTAATTCTTATATACATATTCTTatattgttgtcattgttttctcCAAAATTTACAAAGCTGTTTTAATGAGCTATTCAACTGTATGGGATCGAGTTGTGCTGACATTTTATTAGCAACTGATTCAAGTCCTACAGGTGGTACACTTTGAAGGAAATATATCTACGATACACTTGCAAGCCCAGGCAATATGGTGCTGTGCCAACAGGATTTAAAAGTATTGGAGAACAGAAGGCTGAGTGTAAGAGTCACGTGACCCTACTTTAGCCTAAAGCTGAAGAAGCTGACGGCATGCCCTTGGGCACgcaatttaaatgtgttgctgTCCTTATCAACCTAGCAGACCTGTCATTGCTGCTTACCTACTTTGTATGCTTTTATTGGTGCATGAATCGGGAGAAAAACTGCAAACCCCAGCCTcctttgcagtttgttttgaatggtAGTGCATTAAActaatacatgcacacatgcagtgGCACACAAACAGTGTCTTTTCACACCACACACTCTACAGGTTAGTTTTACATTGCAGCTCTAGTGAGACACATTGATGCATAGCAAATAGATCAAATTAACCCTGgaggtttatttttctatttttgtaatatttaaaaagttaaaagaatCATTCTAAGCAGATCAACATCACTTTAGtaagaaagaaatatattaaattacctTATCATTCTATCACCTACTGCTGATCCTCTGAAATTAAATCTATTGGAGGGAACACAATATTTACAAACTTTACTTAGGAAACTAACTACAGAAAGTAATCTGTTTTCAGAACAGAACaatgcacatatatatttacaaactgTACAGTCACTTTTGGCTACAACAGctaatgataaaatataatgaatatatgtgCATAAAAGTAAGTAAGGAATGTAAGGATCTCGGTCATCCACCTCTATATGAACAATTACATCATACACTCAAACATCTCTCCAAAGAGTAAGACATGTCTTATTTAGAAATTGATTACGATCCCACCAAGGGCAAATCATTTAGACACAAATCTGTAAAACACTTTCAGGATGAAGCAATTTTCTGTTGTGCATCAAAGGTTAGGCATCAAAAGTTAGGCTTTGAGCCACGTTTCAGGTTACACATTGTTTAGCTTGATTTCTCACGGCCTTACACGAGTAATATATCCTCATACATATCGCTTTCATTTCTTGCTGGTCAAACACCATAGTGTTTATGATTGGATTGATTCTCTGATATTCGTTCTGCTCAGGGCGTTACTTGCCATGGCTAAAGAAGTGCAGAAATTGATCAATTCTGCCCTTTGCTAGAATGGCAAATAATAAAAGCAGCTAATACAACAAGATAATTGTGCAGAAGACACACAGCTTGCAACAAGAAAGATGCTATAATGTGAAAAGGCAGGTGATATAAACTAATATATTCAGATGAGAATATTGGATATTGGATATTCACACTGGtatgttttctctttcactaAAGCAATGCCACATGTCTCATGTACAACAGTAACAAGCTGTCCAAATGCGATTAGATTTCCAACGTGAACTGGTCATATTGGAAACTCTGTTTTGTTGAGCATTAAGGGAACAACAgccattgatttttaaaaagcacatctaTGACAAATTAGTTTCCTTGTTCTTGTGCTTTTCCATTGGTCTTCGCCTTTGAAGTCTGCTGCATAAGGAGTGAAACTGACcttcagtttttaaaaggttttgtctgtgtaaacaagagGCACATTCATCAGCCCCAGCACTGGTGTCAGTGCTGTACCTCATTTTTTTGAAAAGCCAATGAAACGTATAATAAGCAGAGACACTGCTGCAGccaatcataataacaataaatgatCATCATAAATGaaacttaatttgtttcagaaaaataaCCTAGTTGCTACCCATGCTGAATACATCAAGCTTGAGTTGACCCATCACATTAAGACTGCATCGCCAGGTCAGGTCAAGAAAGGTAGCCTTCACACAACGCGCCCAGGCTGCTCAACATGCCACTGAACGCAGGATACATTAGCACATTCAGGGATTGGCAGGCTGTGCTTGAGACTGCTCTCAGAAAGCATAGGACACTTCAGATCTGCTAGGCTTCTACTGTAACTCTCAGCTCCAGCACTTACATCAAACTTATGTGGGCCTCTATAGGGAAATCCCCATCCTGAAGATTTGCACAGTCCCTATGAGGGCcaagagcactttaattcagaaGTTTGCTGACAGGGCAACAACAAGCAAAGGCCAGAAGCCCTACCAATTGAGAAGATGTGTTTAGATGCTTATTTTCCCTTTATAATCCATTACGTCAAGGAcacataaatgtaattgtattgacATGATACTTTATCACACATACATAGTAGAGAGGCCTAATTAACCATTTCATTCCATGGTCTAAAAGACATTTAACTGAAGTTAATAATAAAGAGCAACCTCCTAAAAACTTAAATCATTTGAGAATTTTCTAGTCAAGCTTGTAGGATAGAGTTAAGCGTTTGTTCCCTCTGCTCACGAGTCCCTTGGGTACACTAAGAGAAGCCAACCACACTTAATTCTCCCCACTTAGAACAACATACAGTATCTACAAAGGTCAAGGTGGTACGCAACCAAATTATGTAAAGCAGGGCAGTCGAGACATGAACAAGCATGTCCCTTTCACTCTTCCTTCAAAGGACTTATTGTACACATCTCAAAATCTGGTTGGCAAGAAAATGTCATCAGGGACCTAATTCAAACACGGAGAAAACTGGGAAGGCAGCCGTGAGGAAGAACAGCTTCTCTGACTGGGTGgaacaaagcagaaaaacattttcctctGGAGTTTTTATTTAGTACTTGGTTAAATGCCTAGCCCTGCTCAGTAGACTGCTTTTAATTAAGCTTCCTTTGTTCGTTTATTCATTGCATGTGTCAATATAATGTGAATCcgaatgtttattttaatagacttttaaaaactgaggaggaagaaacacagaaacatacaaTGCATCCATATCACGGTTTGCATAGACACACCCGTTAATGTCTGAACACAACTACAGCCAGAAAACTAAAAGTTGTGAAGCAATATATTATTGATGACACTGTAGTATATCATCTATAAAGCTGACTAACTAAATCAAAAGCAACATGTTTTGCATATTCAACAATCATAAGGTGTTCAAACTTCCCTCCACAACAGCAGCTCTCACGAACTTACTATTGCACTCGGGACACAAACATCTCAAGTAAGAGCCCTTCAAAATACTCCAACAGAGGAGCGTGGTTTGCAGTACTTGCTGCGAGAACATAGTGCGTAACATACCTCTGCCCCTGTCCTGCACGATACCTTGCTGAAGGTATTAAAATGGGGTCGTCGTCGCTGTCATCCGAGTCCTGGTAGCTGCGCGAGGGCTGCTCCCCGCTGCTTTCTCCCGCCGGTTCGGTTCGCCGGCACGACTGGCTGGGGTTTTCCACAGCCGCCCCCTGCTGCGCCTCCAGCGCTGGGGAAGAGGCGCTCTCTCCAGCCGGGAGTGGTTCTGCGGGGGGCTCGGTCACAGGACTGTCCCGAGTGCTGGAGGAGGCCTTTTCTGTGCTGCGGTCGCCAGCCTGCTCCACACTGCCAGTTTCCTGTGGCTCGGGCTGTACGGCCAGCGCAGACGCTGAGATCAGACAGAGGACAATGCATTTTAGTCTGGC

Function

symbol description
dcaf6 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF6 (DDB1 and CUL4 associated factor 6).

NR:

description
DDB1- and CUL4-associated factor 6 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86641 True 4982 lncRNA 0.41 2 9349788 9355238

Neighbor

gene id symbol gene type direction distance location
AMCG00014325 NA coding downstream 121161 9216869 ~ 9228627 (-)
AMCG00014326 NA coding downstream 202451 9144538 ~ 9147337 (-)
AMCG00014318 NA coding downstream 214401 9131415 ~ 9135387 (-)
AMCG00014320 NA coding downstream 264575 9061033 ~ 9085213 (-)
AMCG00014319 NA coding downstream 299146 9047304 ~ 9050642 (-)
AMCG00014331 NA coding upstream 3609 9358847 ~ 9367036 (-)
AMCG00014333 inpp4a coding upstream 18218 9373456 ~ 9418236 (-)
AMCG00014332 NA coding upstream 112086 9467324 ~ 9472259 (-)
AMCG00014341 fhl2,fhl2a,LOC107716797,LOC107676452,LOC107688730 coding upstream 672414 10027652 ~ 10043566 (-)
AMCG00014346 uxs1,LOC107721615,LOC107551074,LOC107676432 coding upstream 837391 10192629 ~ 10197751 (-)
G69250 NA non-coding downstream 351162 8998426 ~ 8998626 (-)
G69233 NA non-coding downstream 458949 8890556 ~ 8890839 (-)
G69086 NA non-coding downstream 1099227 8226494 ~ 8250561 (-)
G68981 NA non-coding downstream 1475430 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 1723413 7625985 ~ 7626375 (-)
G69372 NA non-coding upstream 234586 9589824 ~ 9590081 (-)
G69373 NA non-coding upstream 235938 9591176 ~ 9591381 (-)
G69382 NA non-coding upstream 539488 9894726 ~ 9895580 (-)
G69391 NA non-coding upstream 546119 9901357 ~ 9912021 (-)
G69394 NA non-coding upstream 561607 9916845 ~ 9917335 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 32621 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 965564 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 1191198 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 1210662 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 1926497 7413729 ~ 7423291 (-)
AMCG00014340 NA other upstream 645896 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 702859 10058097 ~ 10061230 (-)
G69537 NA other upstream 1441478 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 1769791 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 2304773 11660011 ~ 11667537 (-)

Expression


Co-expression Network